Analysis of a ribose transport operon from Bacillus subtilis

References

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.I. Basic local alignment search tool. J Mol Biol 1990; 215:403–410
   [Google Scholar]
2. Ames G.F.-L. Bacterial periplasmic transport systems: structure, mechanism and evolution. Ann Rep Biochem 1986; 55:397–425
   [Google Scholar]
3. Anagnostopoulos C., Spizizen J. Requirements for transformation in Bacillus subtilis. J Bacteriol 1961; 81:741–746
   [Google Scholar]
4. Bell A.W., Bucket S.D., Groarke J.M., Hope J.N., Kingsley D.H., Hermodson M.A. The nucleotide sequences of the rbsD, rbsA and rbsC genes of Escherichia coli K12. J Biol Chem 1986; 261:7652–7658
   [Google Scholar]
5. Buckle S.D., Bell A.W., Mohana Rao J.K., Hermodson M.A. An analysis of the structure of the product of the rbs A gene of Escherichia coli K12. J Biol Chem 1986; 261:7659–7662
   [Google Scholar]
6. Chibazakura T., Kawamura F., Takahashi H. Differential regulation of spoOA transcription in Bacillus subtilis: glucose represses promoter switching at the initiation of sporulation. J Bacteriol 1991; 173:2625–2632
   [Google Scholar]
7. Dodd I.B., Egan J.B. Improved detection of helix-turn-helix DNA binding motifs in protein sequences. Nucleic Acids Res 1990; 18:5019–5026
   [Google Scholar]
8. Ferrari E., Howard S.M.H., Hoch J.A. Effect of stage 0 sporulation mutations on subtilisin expression. J Bacteriol 1986; 166:173–179
   [Google Scholar]
9. Gilson E., Alloing G., Schmidt T., Claverys J.-P., Dudler R., Hofnung M. Evidence for high affinity binding-protein dependent transport systems in Gram-positive bacteria and in Mycoplasma. EMBO 1988; Jl:3971–3974
   [Google Scholar]
10. Gouy M., Gautier C., Attimonelli M., Lanave G., di Paola G. acnuc-a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. CABIOS 1985; 1:167–172
    [Google Scholar]
11. Henkin T.M., Grundy F.J., Nicholson W.L., Chambliss G.H. Catabolite repression of alpha-amylase gene expression in Bacillus subtilis involves a rrmr-acting gene product homologous to the Escherichia coli lacl znBgalR repressors. Mol Microbiol 1991; 5:575–584
    [Google Scholar]
12. Higgins C.F., Hyde S.C., Mimmack M.M., Gileadi U., Gill D.R., Gallagher M.P. Binding protein-dependent transport systems. J Bioenerg Biomembr 1990; 22:571–591
    [Google Scholar]
13. Higgins D.G., Bleasby A.J., Fuchs R. CLUSTAL V: improved software for multiple sequence alignment. CABIOS 1992; 8:189–191
    [Google Scholar]
14. Kyte J., Doolittle R. A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982; 157:105–132
    [Google Scholar]
15. Mathiopoulos C., Mueller J.P., Slack F.J., Murphy C.G., Patankar S., Bukusoglu G., Sonenshein A.L. A Bacillus subtilis dipeptide transport system expressed early during sporulation. Mol Microbiol 1991; 5:1903–1913
    [Google Scholar]
16. Miller J.H. Experiments in Molecular Genetics 1972 Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
17. O'Reilly M., Woodson K., Dowds B.C.A., Devine K.M. The citrulline biosynthetic operon argC-E and a ribose transport operon rbs from Bacillus subtilis are negatively regulated by SpoOA. Mol Microbiol 1994; 11:87–98
    [Google Scholar]
18. Perego M., Spiegelman G.B., Hoch J.A. Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spoOA sporulation gene in Bacillus subtilis. Mol Microbiol 1988; 2:689–699
    [Google Scholar]
19. Perego M., Higgins C.F., Pearce S.R., Gallagher M.P., Hoch J.A. The oligopeptide transport system of Bacillus subtilis plays a role in the initiation of sporulation. Mol Microbiol 1991; 5:173–185
    [Google Scholar]
20. Rudner D.Z., Le Deaux J.R., Ireton K., Grossman A.D. The spoOK locus of Bacillus subtilis is homologous to the oligopeptide permease locus and is required for sporulation and competence. J Bacteriol 1991; 173:1388–1398
    [Google Scholar]
21. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: a Laboratory Manual, 2nd edn 1989 Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
22. Satola S., Kirchman P.A., Moran C.P. SpoOA binds to a promoter used by sigA RNA polymerase during sporulation in Bacillus subtilis. Proc Nat Acad Sci USA 1991; 88:4533–4537
    [Google Scholar]
23. Schaeffer P., Miller J., Aubert J. Catabolic repression of bacterial sporulation. Proc Natl Acad Sci USA 1965; 54:701–711
    [Google Scholar]
24. Slack F.J., Mueller J.P., Strauch M.A., Mathiopoulos C., Sonenshein A.L. Transcriptional regulation of a Bacillus subtilis dipeptide transport operon. Mol Microbiol 1991; 5:1915–1925
    [Google Scholar]
25. Staden R. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing. Nucleic Acids Res 1982; 10:4731–4761
    [Google Scholar]
26. Strauch M.A., Spiegelman G.B., Perego M., Johnson W.G., Burbulys D., Hoch J.A. The transition state regulator abrB of Bacillus subtilis is a DNA binding protein. EMBO I 1989; 8:1615–1621
    [Google Scholar]
27. Strauch M.A., Trach K.A., Day J., Hoch J.A. SpoOA activates and represes its own synthesis by binding at its dual promoters. Biochimie 1992; 74:619–626
    [Google Scholar]
28. Tinoco I., Borer P.N., Dengler B., Levine M.D., Uhlenbeck O.G., Crothers D.M., Gralla J. Improved estimation of secondary structure in ribonucleic acids. Nature New Biol 1973; 246:40–41
    [Google Scholar]
29. Weickert M.J., Chambliss G.H. Site-directed mutagenesis of a catabolite repression operator sequence in Bacillus subtilis. Proc Natl Acad Sci USA 1990; 87:6238–6242
    [Google Scholar]
30. Wood H., Dawson M., Devine K.M., McConnell D.J. Characterisation of PBSX, a defective prophage of Bacillus subtilis. J Bacteriol 1990; 172:2667–2674
    [Google Scholar]
31. Woodson K. Identification and characterisation of SpoOA controlled operons in Bacillus subtilis 1992 PhD thesis University of Dublin;
    [Google Scholar]
32. Yamashita S., Kawamura F., Yoshikawa H., Takahashi H., Kobayashi Y., Saito H. Dissection of the expression signals of the spoOA gene of Bacillus subtilis: glucose represses sporulation specific expression. J Gen Microbiol 1989; 135:1335–1345
    [Google Scholar]
33. York K., Kenney T.J., Satola S., Moran C.P., Poth H., Youngman P. SpoOA controls the SigA-dependent activation of Bacillus subtilis sporulation-specific transcription unit spoIIE. J Bacteriol 1992; 174:2648–2658
    [Google Scholar]