Escherichia coli RNase II: characterization of the promoters involved in the transcription of rnb

References

1. Attey A., Belyaeva T., Savery N., Hoggett J., Fujita N., Ishihama A., Busby S. 1994; Interactions between the cyclic AMP receptor protein and the alpha subunit of RNA polymerase at the Escherichia coli galactose operon PI promoter. Nucleic Acids Res 22:4375–4380
   [Google Scholar]
2. Bachmann B. J., Low K. B. 1980; Linkage map of Escherichia coli K-12, edition 6. Microbiol Rev 44:1–56
   [Google Scholar]
3. Belasco J. G. 1993; mRNA dgradation in prokaryotic cells: an overview. Control of mRNA Stability3–12 Edited by Belasco J. G., Brawerman G. New York: Academic Press;
   [Google Scholar]
4. Carpousis A. J., van Houwe G., Ehretsmann C., Krisch H. M. 1994; Copurification of E. coli RNase E and PNPase: evidence for a specific association between two enzymes important for RNA processing and degradation. Cell 76:889–900
   [Google Scholar]
5. Casadaban M., Cohen S. N. 1980; Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J Mol Biol 138:179–207
   [Google Scholar]
6. Collado-Vides J., Magasanik B., Gralla J. D. 1991; Control site location and transcriptional regulation in Escherichia coli. Microbiol Rev 55:371–394
   [Google Scholar]
7. Das A. 1993; Control of transcription termination by RNA-binding proteins. Annu Rev Biochem 62:893–930
   [Google Scholar]
8. Deutscher M. P. 1988; The metabolic role of RNases. Trends Biochem Sci 13:136–139
   [Google Scholar]
9. Donovan W. P., Kushner S. R. 1983; Amplification of ribonuclease II (rnb) activity in Escherichia coli K-12. Nucleic Acids Res 11:265–275
   [Google Scholar]
10. Donovan W. P., Kushner S. R. 1986; Polynucleotide phos-phorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc Natl Acad Sci USA 83:120–124
    [Google Scholar]
11. Guarneros C., Portier C. 1990; Different specificities of ribonuclease II and polynucleotide phosphorylase in 3' mRNA decay. Biochimie 72:771–777
    [Google Scholar]
12. Hajnsdorf E., Steier O., Coscoy L., Teysset L., Regnier P. 1994; Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcripts of Escherichia coli: stabilizing function of RNase II and evidence for efficient degradation in an ams pnp rnb mutant. EMBO J 13:3368–3377
    [Google Scholar]
13. Hawley D. K., McClure W. R. 1983; Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res 11:2237–2255
    [Google Scholar]
14. von Hippel P. H., Bear D. G., Morgan W. D., McSwiggen J. A. 1984; Protein-nucleic acid interactions in transcription: a molecular analysis. Annu Rev Biochem 53:389–446
    [Google Scholar]
15. Ishihama A. 1993; Protein-protein communication within the transcription apparatus. J Bacteriol 175:2483–2489
    [Google Scholar]
16. Kaplan R., Apirion D. 1974; The involvement of ribonuclease I, ribonuclease II, and polynucleotide phosphorylase in the degradation of stable ribonucleic acid during carbon starvation in E. coli. J Biol Chem 249:149–151
    [Google Scholar]
17. Kolb A., Igarashi K., Ishihama A., Lavigne M., Buckle M., Buc H. 1993; E. coli RNA polymerase, deleted in the C-terminal part of its a-subunit, interacts differently with the cAMP-CRP complex at the lacPl and at the galPI promoter. Nucleic Acids Res 21:319–326
    [Google Scholar]
18. McLaren R. S., Newbury S. F., Dance G. S. C., Causton H. C., Higgins C. F. 1991; mRNA degradation by processive 3'-5' exonucleases in vitro and the implications for prokaryotic mRNA decay in vivo. J Mol Biol 221:81–95
    [Google Scholar]
19. Miczak A., Srivastava R. A. K., Apirion D. 1991; Location of the RNA-processing enzymes RNase III, RNase E and PNPase in the Escherichia coli cell. Mol Microbiol 5:1801–1810
    [Google Scholar]
20. Miller J. H. 1972 Experiments in Molecular Genectics Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
21. Minton N. P. 1984; Improved plasmid vectors for the isolation of translational lac gene fusions. Gene 31:269–273
    [Google Scholar]
22. Mott J. E., Galloway J. L., Piatt T. 1985; Maturation of E. coli tryptophan operon: evidence for 3' exonucleolytic processing after rho-independent termination. EMBO J 4:1887–1891
    [Google Scholar]
23. Nikolaev N., Folsom V., Schlessinger D. 1976; Escherichia coli mutants in exoribonucleases. Biochem Biophys Res Commun 70:920–924
    [Google Scholar]
24. Pepe C. M., Maslesa-Galic S., Simons R. W. 1994; Decay of the IS10 antisense RNA by 3' exoribonucleases: evidence tht RNase II stabilizes RNA-OUT against PNPase attack. Mol Microbiol 13:1133–1142
    [Google Scholar]
25. Piedade J., Zilhão R., Arraiano C. M. 1995; Construction and characterization of an absolute deletion mutant of Escherichia coli ribonuclease II. FEMS Microbiol Lett 127:187–194
    [Google Scholar]
26. Piatt T. 1986; Transcription termination and the regulation of gene expression. Annu Rev Biochem 55:339–372
    [Google Scholar]
27. Plumbridge J. A., Dondon J., Nakamura Y., Grunberg-Manago M. 1985; Effect of NusA protein on expression of the nusA, infB operon in E. coli. Nucleic Acids Res 13:3371–3388
    [Google Scholar]
28. Raibaud O., Schwartz M. 1984; Positive control of transcription initiation in bacteria. Annu Rev Biochem 18:389–446
    [Google Scholar]
29. Regnier P., Grunberg-Manago M. 1989; Cleavage by RNase III in the transcripts of the metY-nusA-infB operon of Escherichia coli releases the tRNA and initiates the decay of the dowstream mRNA. J Mol Biol 210:293–302
    [Google Scholar]
30. Regnier P., Portier C. 1986; Initiation, attenuation and RNase III processing of transcripts from the Escherichia coli operon encoding ribosomal protein SI 5 and polynucleotide phosphorylase. J Mol Biol 187:23–32
    [Google Scholar]
31. Robert-Le Meur M., Portier C. 1992; E. coli polynucleotide phosphorylase expression is autoregulated through an RNase III-dependent mechanism. EMBO J 11:2633–2641
    [Google Scholar]
32. Ross W., Gosink K. K., Salomon J., Igarashi K., Zou C, Ishihama A., Severinov K., Gourse R. 1993; A third recognition element in bacterial promoters: DNA binding by the a subunit of RNA polymerase. Science 262:1407–1413
    [Google Scholar]
33. Sambrook J., Maniatis T., Fritsch E. F. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
34. Sanger F., Nicklen S., Coulson A. R. 1977; DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467
    [Google Scholar]
35. Simons R. W., Houman F., Kleckner N. 1987; Improved single mutations and multicopy/ar-based cloning vectors for protein and operon fusions. Gem 53:85–96
    [Google Scholar]
36. Spahr P. F., Schlessinger D. 1963; Breakdown of messenger ribonucleic acid by a potassium-activated phosphodiesterase from Escherichia coli. J Biol Chem 238:2251–2253
    [Google Scholar]
37. Vieira J., Messing J. 1987; Production of single-stranded plasmid DNA. Methods Enzymol 153:3–11
    [Google Scholar]
38. Yanisch-Perron C., Vieira J., Messing J. 1985; Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectors. Gene 33:103–119
    [Google Scholar]
39. Zilhão R., Camelo L., Arraiano C. M. 1993; DNA sequencing and expression of the gene rnb encoding Escherichia coli ribonuclease II. Mol Microbiol 8:43–51
    [Google Scholar]
40. Zilhão R., Caillet J., Regnier P., Arraiano C. M. 1995a; Precise physical mapping of the Escherichia coli rnb gene, encoding the ribonuclease II. Mol & Gen Genet 248:242–246
    [Google Scholar]
41. Zilhão R., Regnier P., Arraiano C. M. 1995b; The role of endonucleases in the expression of Escherichia coli ribonuclease II. FEMS Microbiol Lett 130:237–244
    [Google Scholar]