Naringenin degradation by the endophytic diazotroph Herbaspirillum seropedicae SmR1

References

1. Andersen O. M., Markham K. R. ( 2006). Flavonoids: Chemistry, Biochemistry and Applications Andersen O. M., Markham K. R. Boca Raton, FL: CRC Press;
   [Google Scholar]
2. Arunachalam M., Mohan N., Sugadev R., Chellappan P., Mahadevan A. ( 2003). Degradation of (+)-catechin by Acinetobacter calcoaceticus MTC 127. Biochim Biophys Acta 1621:261–265 [View Article][PubMed]
   [Google Scholar]
3. Balachandar D., Sandhiya G. S., Sugitha T. C. K., Kumar K. ( 2006). Flavonoids and growth hormones influence endophytic colonization and in plant nitrogen fixation by a diazotrophic Serratia sp. in rice. World J Microbiol Biotechnol 22:707–712 [View Article]
   [Google Scholar]
4. Baldani J. I., Baldani V. L. D., Seldin L., Döbereiner J. ( 1986). Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int J Syst Bacteriol 36:86–93 [View Article]
   [Google Scholar]
5. Barz W. ( 1970). Isolation of rhizosphere bacterium capable of degrading flavonoids. Phytochem 9:1745–1749 [View Article]
   [Google Scholar]
6. Bowater L., Fairhurst S. A., Just V. J., Bornemann S. ( 2004). Bacillus subtilis YxaG is a novel Fe-containing quercetin 2,3-dioxygenase. FEBS Lett 557:45–48 [View Article][PubMed]
   [Google Scholar]
7. Bradford M. M. ( 1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254 [View Article][PubMed]
   [Google Scholar]
8. Braune A., Gütschow M., Engst W., Blaut M. ( 2001). Degradation of quercetin and luteolin by Eubacterium ramulus . Appl Environ Microbiol 67:5558–5567 [View Article][PubMed]
   [Google Scholar]
9. Brencic A., Winans S. C. ( 2005). Detection of and response to signals involved in host-microbe interactions by plant-associated bacteria. Microbiol Mol Biol Rev 69:155–194 [View Article][PubMed]
   [Google Scholar]
10. Coco W. M., Rothmel R. K., Henikoff S., Chakrabarty A. M. ( 1993). Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putida . J Bacteriol 175:417–427[PubMed]
    [Google Scholar]
11. Cook N. C., Samman S. ( 1996). Flavonoids – chemistry, metabolism, cardioprotective effects and dietary sources. J Nutr Biochem 7:66–76 [View Article]
    [Google Scholar]
12. Das S., Rosazza J. P. N. ( 2006). Microbial and enzymatic transformations of flavonoids. J Nat Prod 69:499–508 [View Article][PubMed]
    [Google Scholar]
13. Dénarié J., Debellé F., Rosenberg C. ( 1992). Signaling and host range variation in nodulation. Annu Rev Microbiol 46:497–531 [View Article][PubMed]
    [Google Scholar]
14. Durfee T., Nelson R., Baldwin S., Plunkett G. III, Burland V., Mau B., Petrosino J. F., Qin X., Muzny D. M. & other authors ( 2008). The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J Bacteriol 190:2597–2606 [View Article][PubMed]
    [Google Scholar]
15. Gough C., Galera C., Vasse J., Webster G., Cocking E. C., Dénarié J. ( 1997). Specific flavonoids promote intercellular root colonization of Arabidopsis thaliana by Azorhizobium caulinodans ORS571. Mol Plant Microbe Interact 10:560–570 [View Article][PubMed]
    [Google Scholar]
16. Hirooka K., Kunikane S., Matsuoka H., Yoshida K. I., Kumamoto K., Tojo S., Fujita Y. ( 2007). Dual regulation of the Bacillus subtilis regulon comprising the lmrAB and yxaGH operons and yxaF gene by two transcriptional repressors, LmrA and YxaF, in response to flavonoids. J Bacteriol 189:5170–5182 [View Article][PubMed]
    [Google Scholar]
17. Hirooka K., Danjo Y., Hanano Y., Kunikane S., Matsuoka H., Tojo S., Fujita Y. ( 2009). Regulation of the Bacillus subtilis divergent yetL and yetM genes by a transcriptional repressor, YetL, in response to flavonoids. J Bacteriol 191:3685–3697 [View Article][PubMed]
    [Google Scholar]
18. Hopper W., Mahadevan A. ( 1997). Degradation of cathecin by Bradyrhizobium japonicum . Biodeg 8:159–165 [View Article]
    [Google Scholar]
19. Jeffrey A. M., Jerina D. M., Self R., Evans W. C. ( 1972). The bacterial degradation of flavonoids. Oxidative fission of the A-ring of dihydrogossypetin by a Pseudomonas sp.. Biochem J 130:383–390[PubMed]
    [Google Scholar]
20. Jiménez J. I., Miñambres B., García J. L., Díaz E. ( 2002). Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440. Environ Microbiol 4:824–841 [View Article][PubMed]
    [Google Scholar]
21. Klassen G., Pedrosa F. O., Souza E. M., Funayama S., Rigo L. U. ( 1997). Effect of nitrogen compounds on nitrogenase activity in Herbaspirillum seropedicae SmR1. Can J Microbiol 43:887–891 [View Article]
    [Google Scholar]
22. Maddocks S. E., Oyston P. C. F. ( 2008). Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. Microbiology 154:3609–3623 [View Article][PubMed]
    [Google Scholar]
23. Miller J. H. ( 1972). Experiments in Molecular Genetics Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
24. Mulligan J. T., Long S. R. ( 1989). A family of activator genes regulates expression of Rhizobium meliloti nodulation genes. Genetics 122:7–18[PubMed]
    [Google Scholar]
25. Pedrosa F. O., Monteiro R. A., Wassem R., Cruz L. M., Ayub R. A., Colauto N. B., Fernandez M. A., Fungaro M. H. P., Grisard E. C. & other authors ( 2011). Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses. PLoS Genet 7:e1002064 [View Article][PubMed]
    [Google Scholar]
26. Pérez-Pantoja D., De la Iglesia R., Pieper D. H., González B. ( 2008). Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134. FEMS Microbiol Rev 32:736–794 [View Article][PubMed]
    [Google Scholar]
27. Pillai B. V. S., Swarup S. ( 2002). Elucidation of the flavonoid catabolism pathway in Pseudomonas putida PML2 by comparative metabolic profiling. Appl Environ Microbiol 68:143–151 [View Article][PubMed]
    [Google Scholar]
28. Rao J. R., Cooper J. E. ( 1994). Rhizobia catabolize nod gene-inducing flavonoids via C-ring fission mechanisms. J Bacteriol 176:5409–5413[PubMed]
    [Google Scholar]
29. Rao J. R., Cooper J. E. ( 1995). Soybean nodulating rhizobia modify nod gene inducers daidzein and genistein to yield aromatic products that can influence gene-inducing activity. Mol Plant Microbe Interact 8:855–862 [View Article]
    [Google Scholar]
30. Rao J. R., Sharma N. D., Hamilton J. T. G., Boyd D. R., Cooper J. E. ( 1991). Biotransformation of the pentahydroxy flavone quercetin by Rhizobium loti and Bradyrhizobium strains (Lotus). Appl Environ Microbiol 57:1563–1565[PubMed]
    [Google Scholar]
31. Reddy P. M., Rendón-Anaya M., del Río M. D. S., Khandual S. ( 2007). Flavonoids as signalling molecules and regulators of root nodule development. Dynamic Soil, Dynamic Plant 1:83–94
    [Google Scholar]
32. Romero-Arroyo C. E., Schell M. A., Gaines G. L. III, Neidle E. L. ( 1995). catM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticus . J Bacteriol 177:5891–5898[PubMed]
    [Google Scholar]
33. Rothmel R. K., Aldrich T. L., Houghton J. E., Coco W. M., Ornston L. N., Chakrabarty A. M. ( 1990). Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR family. J Bacteriol 172:922–931[PubMed]
    [Google Scholar]
34. Schneider H., Blaut M. ( 2000). Anaerobic degradation of flavonoids by Eubacterium ramulus . Arch Microbiol 173:71–75 [View Article][PubMed]
    [Google Scholar]
35. Schoefer L., Mohan R., Schwiertz A., Braune A., Blaut M. ( 2003). Anaerobic degradation of flavonoids by Clostridium orbiscindens . Appl Environ Microbiol 69:5849–5854 [View Article][PubMed]
    [Google Scholar]
36. Spaink H. P., Okker R. J. H., Wijffelman C. A., Pees E., Lugtenberg B. J. J. ( 1987). Promoters in the nodulation region of the Rhizobium leguminosarum Sym plasmid pRL1JI. Plant Mol Biol 9:27–39[PubMed] [CrossRef]
    [Google Scholar]
37. Suen W. C., Spain J. C. ( 1993). Cloning and characterization of Pseudomonas sp. strain DNT genes for 2,4-dinitrotoluene degradation. J Bacteriol 175:1831–1837[PubMed]
    [Google Scholar]
38. Williams C. A., Grayer R. J. ( 2004). Anthocyanins and other flavonoids. Nat Prod Rep 21:539–573 [View Article][PubMed]
    [Google Scholar]
39. Winter J., Moore L. H., Dowell V. R. Jr, Bokkenheuser V. D. ( 1989). C-ring cleavage of flavonoids by human intestinal bacteria. Appl Environ Microbiol 55:1203–1208[PubMed]
    [Google Scholar]
40. You I. S., Ghosal D., Gunsalus I. C. ( 1988). Nucleotide sequence of plasmid NAH7 gene nahR and DNA binding of the nahR product. J Bacteriol 170:5409–5415[PubMed]
    [Google Scholar]