1887

Abstract

serovar Typhimurium () survives and proliferates within macrophage cells. A mutant library of strain ATCC 14028 based on gene disruption by homologous recombination was screened in order to identify genes that are required for wild-type-like intracellular replication. Randomly generated chromosomal fragments from the genome of were cloned into a temperature-sensitive vector, and approximately 8000 individual mutant clones were obtained by insertional-duplication mutagenesis (IDM) upon selection at non-permissive temperature. Large-scale screening for replication defects in mouse macrophages, but not during growth in rich or minimal medium, revealed a set of attenuated mutants that were further characterized by PCR amplification and sequencing of the mutagenic fragments. Following analysis of a genome map with the annotated positions of vector insertions, an accumulation of 33 attenuating insertions within genes of ten non-collinear regions was found. Insertions in , and five SPI-2 genes as well as seven non-polar deletions validated the screen. No invasion deficiencies of the mutants were observed. The -- cluster containing the genes for cobalamin synthesis and 1,2-propanediol degradation was shown to be required for replication within macrophages. These data gave rise to a model of eukaryotic glycoconjugates and phospholipids as alternative carbon, nitrogen and energy sources for intracellularly replicating bacteria. The contribution of as yet unknown components of SPI-6 and the Gifsy-1 and Gifsy-2 prophage islands to intracellular replication is reported, as well as the fivefold reduced intracellular growth rate of a mutant with a deletion of STM1677, which probably encodes a LysR-like transcriptional regulator. The intracellular replication rate of three double mutants, each lacking two gene products of the -- cluster or the Gifsy-1 prophage, was shown to be lower than that of the respective single mutants, suggesting that additive effects of subtle intracellular advantages contribute to fitness .

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2007-04-01
2024-04-19
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References

  1. Abromaitis S., Faucher S., Beland M., Curtiss R. 3rd, Daigle F. 2005; The presence of the tet gene from cloning vectors impairs Salmonella survival in macrophages. FEMS Microbiol Lett 242:305–312 [CrossRef]
    [Google Scholar]
  2. Adkins J. N., Mottaz H. M., Norbeck A. D., Gustin J. K., Rue J., Clauss T. R., Purvine S. O., Rodland K. D., Heffron F., Smith R. D. 2006; Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions. Mol Cell Proteomics 5:1450–1461 [CrossRef]
    [Google Scholar]
  3. Alpuche-Aranda C. M., Swanson J. A., Loomis W. P., Miller S. I. 1992; Salmonella typhimurium activates virulence gene transcription within acidified macrophage phagosomes. Proc Natl Acad Sci U S A 89:10079–10083 [CrossRef]
    [Google Scholar]
  4. Basso H., Rharbaoui F., Staendner L. H., Medina E., Garcia-Del Portillo F., Guzman C. A. 2002; Characterization of a novel intracellularly activated gene from Salmonella enterica serovar Typhi. Infect Immun 70:5404–5411 [CrossRef]
    [Google Scholar]
  5. Bäumler A. J., Kusters J. G., Stojiljkovic I., Heffron F. 1994; Salmonella typhimurium loci involved in survival within macrophages. Infect Immun 62:1623–1630
    [Google Scholar]
  6. Beuzón C. R., Unsworth K. E., Holden D. W. 2001; In vivo genetic analysis indicates that PhoP-PhoQ and the Salmonella pathogenicity island 2 type III secretion system contribute independently to Salmonella enterica serovar Typhimurium virulence. Infect Immun 69:7254–7261 [CrossRef]
    [Google Scholar]
  7. Bjorkman J., Rhen M., Anderson D. I. 1996; Salmonella typhimurium cob mutants are not hyper-virulent. FEMS Microbiol Lett 139:121–126 [CrossRef]
    [Google Scholar]
  8. Bobik T. A., Ailion M., Roth J. R. 1992; A single regulatory gene integrates control of vitamin B12 synthesis and propanediol degradation. J Bacteriol 174:2253–2266
    [Google Scholar]
  9. Bowe F., Lipps C. J., Tsolis R. M., Groisman E., Heffron F., Kusters J. G. 1998; At least four percent of the Salmonella typhimurium genome is required for fatal infection of mice. Infect Immun 66:3372–3377
    [Google Scholar]
  10. Brodsky I. E., Ghori N., Falkow S., Monack D. 2005; Mig-14 is an inner membrane-associated protein that promotes Salmonella typhimurium resistance to CRAMP, survival within activated macrophages and persistent infection. Mol Microbiol 55:954–972
    [Google Scholar]
  11. Browne S. H., Lesnick M. L., Guiney D. G. 2002; Genetic requirements for salmonella-induced cytopathology in human monocyte-derived macrophages. Infect Immun 70:7126–7135 [CrossRef]
    [Google Scholar]
  12. Brumell J. H., Kujat-Choy S., Brown N. F., Vallance B. A., Knodler L. A., Finlay B. B. 2003; SopD2 is a novel type III secreted effector of Salmonella typhimurium that targets late endocytic compartments upon delivery into host cells. Traffic 4:36–48 [CrossRef]
    [Google Scholar]
  13. Buchmeier N. A., Heffron F. 1989; Intracellular survival of wild-type Salmonella typhimurium and macrophage-sensitive mutants in diverse populations of macrophages. Infect Immun 57:1–7
    [Google Scholar]
  14. Buchmeier N. A., Heffron F. 1990; Induction of Salmonella stress proteins upon infection of macrophages. Science 248:730–732 [CrossRef]
    [Google Scholar]
  15. Buchmeier N. A., Lipps C. J., So M. Y., Heffron F. 1993; Recombination-deficient mutants of Salmonella typhimurium are avirulent and sensitive to the oxidative burst of macrophages. Mol Microbiol 7:933–936 [CrossRef]
    [Google Scholar]
  16. Bumann D., Hueck C., Aebischer T., Meyer T. F. 2000; Recombinant live Salmonella spp. for human vaccination against heterologous pathogens. FEMS Immunol Med Microbiol 27:357–364 [CrossRef]
    [Google Scholar]
  17. Cano D. A., Pucciarelli M. G., Garcia-del Portillo F., Casadesus J. 2002; Role of the RecBCD recombination pathway in Salmonella virulence. J Bacteriol 184:592–595 [CrossRef]
    [Google Scholar]
  18. Conner C. P., Heithoff D. M., Julio S. M., Sinsheimer R. L., Mahan M. J. 1998; Differential patterns of acquired virulence genes distinguish Salmonella strains. Proc Natl Acad Sci U S A 95:4641–4645 [CrossRef]
    [Google Scholar]
  19. Datsenko K. A., Wanner B. L. 2000; One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640–6645 [CrossRef]
    [Google Scholar]
  20. De Groote M. A., Ochsner U. A., Shiloh M. U., Nathan C., McCord J. M., Dinauer M. C., Libby S. J., Vazquez-Torres A., Xu Y., Fang F. C. 1997; Periplasmic superoxide dismutase protects Salmonella from products of phagocyte NADPH-oxidase and nitric oxide synthase. Proc Natl Acad Sci U S A 94:13997–14001 [CrossRef]
    [Google Scholar]
  21. Detweiler C. S., Monack D. M., Brodsky I. E., Mathew H., Falkow S. 2003; virK , somA and rcsC are important for systemic Salmonella enterica serovar Typhimurium infection and cationic peptide resistance. Mol Microbiol 48:385–400 [CrossRef]
    [Google Scholar]
  22. Edwards R. A., Schifferli D. M., Maloy S. R. 2000; A role for Salmonella fimbriae in intraperitoneal infections. Proc Natl Acad Sci U S A 97:1258–1262 [CrossRef]
    [Google Scholar]
  23. Eriksson S., Lucchini S., Thompson A., Rhen M., Hinton J. C. 2003; Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica . Mol Microbiol 47:103–118
    [Google Scholar]
  24. Fang F. C., Libby S. J., Buchmeier N. A., Loewen P. C., Switala J., Harwood J., Guiney D. G. 1992; The alternative sigma factor katF ( rpoS ) regulates Salmonella virulence. Proc Natl Acad Sci U S A 89:11978–11982 [CrossRef]
    [Google Scholar]
  25. Fields P. I., Swanson R. V., Haidaris C. G., Heffron F. 1986; Mutants of Salmonella typhimurium that cannot survive within the macrophage are avirulent. Proc Natl Acad Sci U S A 83:5189–5193 [CrossRef]
    [Google Scholar]
  26. Figueroa-Bossi N., Bossi L. 1999; Inducible prophages contribute to Salmonella virulence in mice. Mol Microbiol 33:167–176 [CrossRef]
    [Google Scholar]
  27. Figueroa-Bossi N., Uzzau S., Maloriol D., Bossi L. 2001; Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella . Mol Microbiol 39:260–271 [CrossRef]
    [Google Scholar]
  28. Finlay B. B., Falkow S. 1997; Common themes in microbial pathogenicity revisited. Microbiol Mol Biol Rev 61:136–169
    [Google Scholar]
  29. Folkesson A., Advani A., Sukupolvi S., Pfeifer J. D., Normark S., Lofdahl S. 1999; Multiple insertions of fimbrial operons correlate with the evolution of Salmonella serovars responsible for human disease. Mol Microbiol 33:612–622 [CrossRef]
    [Google Scholar]
  30. Folkesson A., Lofdahl S., Normark S. 2002; The Salmonella enterica subspecies I specific centisome 7 genomic island encodes novel protein families present in bacteria living in close contact with eukaryotic cells. Res Microbiol 153:537–545 [CrossRef]
    [Google Scholar]
  31. Freissler E., Fuchs T. M., Niesalla H., Apfel H. 2004; Screening method for attenuating or virulence defective microbial cells. Patent WO02092814
    [Google Scholar]
  32. Fuchs T. M., Klumpp J., Przybilla K. 2006; Insertion-duplication mutagenesis of Salmonella enterica and related species using a novel thermosensitive vector. Plasmid 55:39–49 [CrossRef]
    [Google Scholar]
  33. Garcia-del Portillo F. 2001; Salmonella intracellular proliferation: where, when and how?. Microbes Infect 3:1305–1311 [CrossRef]
    [Google Scholar]
  34. Gulig P. A., Doyle T. J. 1993; The Salmonella typhimurium virulence plasmid increases the growth rate of salmonellae in mice. Infect Immun 61:504–511
    [Google Scholar]
  35. Hacker J., Kaper J. B. 2000; Pathogenicity islands and the evolution of microbes. Annu Rev Microbiol 54:641–679 [CrossRef]
    [Google Scholar]
  36. Heithoff D. M., Conner C. P., Hentschel U., Govantes F., Hanna P. C., Mahan M. J. 1999; Coordinate intracellular expression of Salmonella genes induced during infection. J Bacteriol 181:799–807
    [Google Scholar]
  37. Hensel M. 2004; Evolution of pathogenicity islands of Salmonella enterica . Int J Med Microbiol 294:95–102 [CrossRef]
    [Google Scholar]
  38. Hensel M., Shea J. E., Gleeson C., Jones M. D., Dalton E., Holden D. W. 1995; Simultaneous identification of bacterial virulence genes by negative selection. Science 269:400–403 [CrossRef]
    [Google Scholar]
  39. Ho T. D., Figueroa-Bossi N., Wang M., Uzzau S., Bossi L., Slauch J. M. 2002; Identification of GtgE, a novel virulence factor encoded on the Gifsy-2 bacteriophage of Salmonella enterica serovar Typhimurium. J Bacteriol 184:5234–5239 [CrossRef]
    [Google Scholar]
  40. Hoiseth S. K., Stocker B. A. 1981; Aromatic-dependent Salmonella typhimurium are non-virulent and effective as live vaccines. Nature 291:238–239 [CrossRef]
    [Google Scholar]
  41. Hurley B. P., McCormick B. A. 2003; Translating tissue culture results into animal models: the case of Salmonella typhimurium . Trends Microbiol 11:562–569 [CrossRef]
    [Google Scholar]
  42. Joseph B., Przybilla K., Schauer K., Slaghuis J., Fuchs T. M., Goebel W., Stühler C. 2006; Identification of Listeria monocytogenes genes contributing to intracellular replication by expression profiling and mutant screening. J Bacteriol 188:556–568 [CrossRef]
    [Google Scholar]
  43. Kingsley R. A., Humphries A. D., Weening E. H., De Zoete M. R., Winter S., Papaconstantinopoulou A., Dougan G., Bäumler A. J. 2003; Molecular and phenotypic analysis of the CS54 island of Salmonella enterica serotype Typhimurium: identification of intestinal colonization and persistence determinants. Infect Immun 71:629–640 [CrossRef]
    [Google Scholar]
  44. Knuth K., Niesalla H., Hueck C. J., Fuchs T. M. 2004; Large-scale identification of essential Salmonella genes by trapping lethal insertions. Mol Microbiol 51:1729–1744 [CrossRef]
    [Google Scholar]
  45. Korbel J. O., Doerks T., Jensen L. J., Perez-Iratxeta C., Kaczanowski S., Hooper S. D., Andrade M. A., Bork P. 2005; Systematic association of genes to phenotypes by genome and literature mining. PLoS Biol 3:e134 [CrossRef]
    [Google Scholar]
  46. Kuhle V., Hensel M. 2004; Cellular microbiology of intracellular Salmonella enterica : functions of the type III secretion system encoded by Salmonella pathogenicity island 2. Cell Mol Life Sci 61:2812–2826 [CrossRef]
    [Google Scholar]
  47. Lau G. W., Haataja S., Lonetto M., Kensit S. E., Marra A., Bryant A. P., McDevitt D., Morrison D. A., Holden D. W. 2001; A functional genomic analysis of type 3 Streptococcus pneumoniae virulence. Mol Microbiol 40:555–571 [CrossRef]
    [Google Scholar]
  48. Law J., Buist G., Haandrikman A., Kok J., Venema G., Leenhouts K. 1995; A system to generate chromosomal mutations in Lactococcus lactis which allows fast analysis of targeted genes. J Bacteriol 177:7011–7018
    [Google Scholar]
  49. Lawhon S. D., Frye J. G., Sueymoto M., Porwollik S., McClelland M., Altier C. 2003; Global regulation by CsrA in Salmonella typhimurium . Mol Microbiol 48:1633–1645 [CrossRef]
    [Google Scholar]
  50. Lawley T. D., Chan K., Thompson L. J., Kim C. C., Govoni G. R., Monack D. M. 2006; Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse. PLoS Pathog 2:e11 [CrossRef]
    [Google Scholar]
  51. Leung K. Y., Finlay B. B. 1991; Intracellular replication is essential for the virulence of Salmonella typhimurium . Proc Natl Acad Sci U S A 88:11470–11474 [CrossRef]
    [Google Scholar]
  52. Link A. J., Phillips D., Church G. M. 1997; Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli : application to open reading frame characterization. J Bacteriol 179:6228–6237
    [Google Scholar]
  53. Mahan M. J., Slauch J. M., Mekalanos J. J. 1993; Selection of bacterial virulence genes that are specifically induced in host tissues. Science 259:686–688 [CrossRef]
    [Google Scholar]
  54. McClelland M., Sanderson K. E., Spieth J., Clifton S. W., Latreille P., Courtney L., Porwollik S., Ali J., Dante M. & other authors 2001; Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413:852–856 [CrossRef]
    [Google Scholar]
  55. Mei J. M., Nourbakhsh F., Ford C. W., Holden D. W. 1997; Identification of Staphylococcus aureus virulence genes in a murine model of bacteraemia using signature-tagged mutagenesis. Mol Microbiol 26:399–407 [CrossRef]
    [Google Scholar]
  56. Merlin C., McAteer S., Masters M. 2002; Tools for characterization of Escherichia coli genes of unknown function. J Bacteriol 184:4573–4581 [CrossRef]
    [Google Scholar]
  57. Merrell D. S., Camilli A. 2000; Detection and analysis of gene expression during infection by in vivo expression technology. Philos Trans R Soc Lond B Biol Sci 355:587–599 [CrossRef]
    [Google Scholar]
  58. Miller S. I. 1991; PhoP/PhoQ: macrophage-specific modulators of Salmonella virulence?. Mol Microbiol 5:2073–2078 [CrossRef]
    [Google Scholar]
  59. Miller V. L. 1995; Tissue-culture invasion: fact or artefact?. Trends Microbiol 3:69–71 [CrossRef]
    [Google Scholar]
  60. Mills S. D., Finlay B. B. 1998; Isolation and characterization of Salmonella typhimurium and Yersinia pseudotuberculosis -containing phagosomes from infected mouse macrophages: Y. pseudotuberculosis traffics to terminal lysosomes where they are degraded. Eur J Cell Biol 77:35–47 [CrossRef]
    [Google Scholar]
  61. Moors M. A., Portnoy D. A. 1995; Identification of bacterial genes that contribute to survival and growth in an intracellular environment. Trends Microbiol 3:83–85 [CrossRef]
    [Google Scholar]
  62. Navarre W. W., Halsey T. A., Walthers D., Frye J., McClelland M., Potter J. L., Kenney L. J., Gunn J. S., Fang F. C., Libby S. J. 2005; Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ. Mol Microbiol 56:492–508 [CrossRef]
    [Google Scholar]
  63. Peschel A. 2002; How do bacteria resist human antimicrobial peptides?. Trends Microbiol 10:179–186 [CrossRef]
    [Google Scholar]
  64. Pulkkinen W. S., Miller S. I. 1991; A Salmonella typhimurium virulence protein is similar to a Yersinia enterocolitica invasion protein and a bacteriophage lambda outer membrane protein. J Bacteriol 173:86–93
    [Google Scholar]
  65. Richter-Dahlfors A., Buchan A. M., Finlay B. B. 1997; Murine salmonellosis studied by confocal microscopy: Salmonella typhimurium resides intracellularly inside macrophages and exerts a cytotoxic effect on phagocytes in vivo. J Exp Med 186:569–580 [CrossRef]
    [Google Scholar]
  66. Rondon M. R., Kazmierczak R., Escalante-Semerena J. C. 1995; Glutathione is required for maximal transcription of the cobalamin biosynthetic and 1,2-propanediol utilization ( cob/pdu ) regulon and for the catabolism of ethanolamine, 1,2-propanediol, and propionate in Salmonella typhimurium LT2. J Bacteriol 177:5434–5439
    [Google Scholar]
  67. Roth J. R., Lawrence J. G., Bobik T. A. 1996; Cobalamin (coenzyme B12): synthesis and biological significance. Annu Rev Microbiol 50:137–181 [CrossRef]
    [Google Scholar]
  68. Sambrook J., Russell D. W. 2001 Molecular Cloning: a Laboratory Manual , 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  69. Schmidt H., Zhang W. L., Hemmrich U., Jelacic S., Brunder W., Tarr P. I., Dobrindt U., Hacker J., Karch H. 2001; Identification and characterization of a novel genomic island integrated at selC in locus of enterocyte effacement-negative, Shiga toxin-producing Escherichia coli . Infect Immun 69:6863–6873 [CrossRef]
    [Google Scholar]
  70. Stanley T. L., Ellermeier C. D., Slauch J. M. 2000; Tissue-specific gene expression identifies a gene in the lysogenic phage Gifsy-1 that affects Salmonella enterica serovar Typhimurium survival in Peyer's patches. J Bacteriol 182:4406–4413 [CrossRef]
    [Google Scholar]
  71. Stojiljkovic I., Heffron F., Bäumler A. J. 1995; Ethanolamine utilization in Salmonella typhimurium : nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene cluster. J Bacteriol 177:1357–1366
    [Google Scholar]
  72. Valdivia R. H., Falkow S. 1997; Fluorescence-based isolation of bacterial genes expressed within host cells. Science 277:2007–2011 [CrossRef]
    [Google Scholar]
  73. van der Velden A. W., Lindgren S. W., Worley M. J., Heffron F. 2000; Salmonella pathogenicity island 1-independent induction of apoptosis in infected macrophages by Salmonella enterica serotype Typhimurium. Infect Immun 68:5702–5709 [CrossRef]
    [Google Scholar]
  74. Weinstein D. L., Carsiotis M., Lissner C. R., O'Brien A. D. 1984; Flagella help Salmonella typhimurium survive within murine macrophages. Infect Immun 46:819–825
    [Google Scholar]
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