1887

Abstract

is a haploid opportunistic pathogen accounting for about 2 % of human blood yeast infections. Recent analyses using multilocus enzyme electrophoresis and karyotyping suggest that strains from human sources traditionally designated in fact include at least two species, and . However, the patterns of molecular variation within and between these two species remain largely unknown. In this study, DNA fragments were sequenced from five genes for each of 37 strains collected from Canada, China, the Philippines and Tanzania. The analyses identified significant sequence differences between and . The five gene genealogies showed no apparent incongruence, suggesting a predominantly clonal reproductive structure for both species in nature. Indeed, two large clones of were identified, with one from Ontario, Canada, and the other from China. Interestingly, the results indicate that strains currently designated may contain additional divergent lineages. On the practical side, the results revealed several diagnostic molecular markers that can be used in clinical microbiology laboratories to distinguish and . The multiple gene genealogical analyses conducted here revealed significant divergence and clonal dispersal in this important pathogenic yeast complex.

Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.28626-0
2006-05-01
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/micro/152/5/1539.html?itemId=/content/journal/micro/10.1099/mic.0.28626-0&mimeType=html&fmt=ahah

References

  1. Agapow P. M., Burt A. 2001; Indices of multilocus linkage disequilibrium. Mol Ecol Notes 1:101–102 [CrossRef]
    [Google Scholar]
  2. Bai F. Y., Liang H. Y., Jia J. H. 2000; Taxonomic relationships among the taxa in the Candida guilliermondii complex, as revealed by comparative electrophoretic karyotyping. Int J Syst Evol Microbiol 50:417–422 [CrossRef]
    [Google Scholar]
  3. Barnett J. A., Payne R. W., Yarrow D. 2000 Yeast Characteristics and Identification, 3rd edn. Cambridge: Cambridge University Press;
    [Google Scholar]
  4. Doi M., Homma M., Chindamporn A., Tanaka K. 1992; Estimation of chromosome number and size by pulsed-field gel electrophoresis (PFGE) in medically important Candida species. J Gen Microbiol 138:2243–2251 [CrossRef]
    [Google Scholar]
  5. Dos Santos A. L., Soares R. M. 2005; Candida guilliermondii isolated from HIV-infected human secretes a 50 kDa serine proteinase that cleaves a broad spectrum of proteinaceous substrates. FEMS Immunol Med Microbiol 43:13–20 [CrossRef]
    [Google Scholar]
  6. Faith D. L. 1991; Cladistic permutation tests for monophyly and nonmonophyly. Syst Zool 40:366–375 [CrossRef]
    [Google Scholar]
  7. Farris J. S., Kallersjo M., Kluge A. G., Bult C. 1995; Testing significance of incongruence. Cladistics 10:315–319
    [Google Scholar]
  8. Imshenetskii A. A., Solntseva L. I., Afanas'eva L. N. 1979; Biomass accumulation by polyploid forms of Candida guilliermondii yeasts. Mikrobiologiia 48:418–422
    [Google Scholar]
  9. Kam A., Xu J. 2002; Diversity of commensal yeasts from within and between healthy hosts. Diag Microbiol Infect Dis 43:19–28 [CrossRef]
    [Google Scholar]
  10. Kidd S. E., Guo H., Bartlett K., Xu J., Kronstad J. W. 2005; Comparative gene genealogies indicate that two clonal lineages of Cryptococcus gattii in British Columbia resemble strains from other geographical areas. Eukaryot Cell 4:1629–1638 [CrossRef]
    [Google Scholar]
  11. Krcmery V., Barnes A. J. 2002; Non- Candida albicans spp. causing fungaemia: pathogenicity and antifungal resistance. J Hosp Infect 50:243–260 [CrossRef]
    [Google Scholar]
  12. Maiden M. C., Bygraves J. A., Feil E. 10 other authors 1998; Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95:3140–3145 [CrossRef]
    [Google Scholar]
  13. McEwen J. G., Taylor J. W., Carter D. 8 other authors 2000; Molecular typing of pathogenic fungi. Med Mycol 38:189–197 [CrossRef]
    [Google Scholar]
  14. Odds F. C. 1988 Candida and Candidiasis London: Baillière Tindall;
    [Google Scholar]
  15. Pujol C., Dodgson A., Soll D. R. 2005; Population genetics of ascomycetes pathogenic to humans and animals. In Evolutionary Genetics of Fungi pp 149–188 Edited by Xu J. Norwich, UK: Horizon Scientific Press;
    [Google Scholar]
  16. Sandven P. 2000; Epidemiology of candidemia. Rev Iberoam Micol 17:73–81
    [Google Scholar]
  17. San Millan R. M., Wu L. C., Salkin I. F., Lehmann P. F. 1997; Clinical isolates of Candida guilliermondii include Candida fermentati . Int J Syst Bacteriol 47:385–393 [CrossRef]
    [Google Scholar]
  18. Sullivan D. J., Westerneng T. J., Haynes K. A., Bennett D. E., Coleman D. C. 1995; Candida dubliniensis sp. nov.: phenotypic and molecular characterization of a novel species associated with oral candidosis in HIV-infected individuals. Microbiology 141:1507–1521 [CrossRef]
    [Google Scholar]
  19. Swofford D. L. 2004 paup* – Phylogenetic Analysis Using Parsimony*and Other Methods, version 4 Sunderland, MA: Sinauer Associates;
    [Google Scholar]
  20. Tavanti A., Davidson A. D., Gow N. A., Maiden M. C., Odds F. C. 2005; Candida orthopsilosis and Candida metapsilosis spp. nov. to replace Candida parapsilosis groups II and III. J Clin Microbiol 43:284–292 [CrossRef]
    [Google Scholar]
  21. Tey R., Yan Z., Han S., Li X., Lazazzera K., Sun S., Xu J. 2003; Ecology and epidemiology of drug resistance in human pathogenic yeasts. Res Adv Microbiol 3:67–85
    [Google Scholar]
  22. Warren N. G., Hazen K. C. 1999; Candida , Cryptococcus , and other yeasts of medical significance. In Manual of Clinical Microbiology, 7th edn. pp 1184–1199 Edited by Murray P. R., Baron E. J., Pfaller M. A., Tenover F. C., Yolken R. H. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  23. Xu J. 2004a; Gene genealogical analyses of human fungal pathogens. In Pathogenic Fungi: Structural Biology and Taxonomy pp 299–318 Edited by San-Blas G., Calderone R. Norwich: Horizon Scientific Press;
    [Google Scholar]
  24. Xu J. 2004b; The prevalence and evolution of sex in microorganisms. Genome 47:775–780 [CrossRef]
    [Google Scholar]
  25. Xu J. 2005; Fundamentals of fungal molecular population genetic analyses. Evolutionary Genetics of Fungi pp 87–116 Edited by Xu J. Norwich: Horizon Scientific Press;
    [Google Scholar]
  26. Xu J. 2006; Microbial ecology in the age of genomics and metagenomics: concepts, tools and recent advances. Mol Ecol in press
    [Google Scholar]
  27. Xu J., Mitchell T. G. 2003a; Geographic differences in human oral yeast flora. Clin Infect Dis 36:221–224 [CrossRef]
    [Google Scholar]
  28. Xu J., Mitchell T. G. 2003b; Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans . Microbiology 149:2147–2154 [CrossRef]
    [Google Scholar]
  29. Xu J., Boyd C. M., Livingstone E., Meyer W., Madden J. F., Mitchell T. G. 1999a; Species and genotypic diversities and similarities of pathogenic yeasts colonizing women. J Clin Microbiol 37:3835–3843
    [Google Scholar]
  30. Xu J., Vilgalys R., Mitchell T. G. 1999b; Lack of genetic differentiation between two geographic samples of Candida albicans isolated from patients infected with the human immunodeficiency virus. J Bacteriol 181:1369–1373
    [Google Scholar]
  31. Xu J., Mitchell T. G., Vilgalys R. 1999c; PCR-RFLP analyses reveal both extensive clonality and local genetic differentiation in Candida albicans . Mol Ecol 8:59–74 [CrossRef]
    [Google Scholar]
  32. Xu J., Ramos A. R., Vilgalys R., Mitchell T. G. 2000a; Clonal and spontaneous origins of fluconazole resistance in Candida albicans . J Clin Microbiol 38:1214–1220
    [Google Scholar]
  33. Xu J., Vilgalys R., Mitchell T. G. 2000b; Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans . Mol Ecol 9:1471–1481 [CrossRef]
    [Google Scholar]
  34. Xu J., Luo G., Vilgalys R. J., Brandt M. E., Mitchell T. G. 2002; Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD. Microbiology 148:203–212
    [Google Scholar]
  35. Xu J., Cheng M., Tan Q., Pan Y. 2005; Molecular population genetics of basidiomycete fungi. In Evolutionary Genetics of Fungi pp 221–252 Edited by Xu J. Norwich, UK: Horizon Scientific Press;
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.28626-0
Loading
/content/journal/micro/10.1099/mic.0.28626-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error