Post-translational control of the Streptomyces lividans ClgR regulon by ClpP

References

1. Bellier A, Mazodier P. 2004; ClgR, a novel regulator of clp and lon expression in Streptomyces . J Bacteriol 186:3238–3248 [CrossRef]
   [Google Scholar]
2. Blaszczak A, Georgopoulos C, Liberek K. 1999; On the mechanism of FtsH-dependent degradation of the sigma 32 transcriptional regulator of Escherichia coli and the role of the Dnak chaperone machine. Mol Microbiol 31:157–166 [CrossRef]
   [Google Scholar]
3. Bradford M. 1976; A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding. Anal Biochem 72:248–254 [CrossRef]
   [Google Scholar]
4. Bucca G, Brassington A. M, Schonfeld H. J, Smith C. P. 2000; The HspR regulon of Streptomyces coelicolor : a role for the DnaK chaperone as a transcriptional co-repressor. Mol Microbiol 38:1093–1103
   [Google Scholar]
5. Chater K. F. 2001; Regulation of sporulation in Streptomyces coelicolor A3(2): a checkpoint multiplex?. Curr Opin Microbiol 4:667–673 [CrossRef]
   [Google Scholar]
6. De Crecy-Lagard V, Servant-Moisson P, Viala J, Grandvalet C, Mazodier P. 1999; Alteration of the synthesis of the Clp ATP-dependent protease affects morphological and physiological differentiation in Streptomyces . Mol Microbiol 32:505–517 [CrossRef]
   [Google Scholar]
7. Domian I. J, Quon K. C, Shapiro L. 1997; Cell type-specific phosphorylation and proteolysis of a transcriptional regulator controls the G1-to-S transition in a bacterial cell cycle. Cell 90:415–424 [CrossRef]
   [Google Scholar]
8. Engels S, Schweitzer J. E, Ludwig C, Bott M, Schaffer S. 2004; clpC and clpP1P2 gene expression in Corynebacterium glutamicum is controlled by a regulatory network involving the transcriptional regulators ClgR and HspR as well as the ECF sigma factor sigmaH. Mol Microbiol 52:285–302 [CrossRef]
   [Google Scholar]
9. Engels S, Ludwig C, Schweitzer J. E, Mack C, Bott M, Schaffer S. 2005; The transcriptional activator ClgR controls transcription of genes involved in proteolysis and DNA repair in Corynebacterium glutamicum . Mol Microbiol 57:576–591 [CrossRef]
   [Google Scholar]
10. Flynn J. M, Neher S. B, Kim Y. I, Sauer R. T, Baker T. A. 2003; Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals. Mol Cell 11:671–683 [CrossRef]
    [Google Scholar]
11. Gerth U, Kirstein J, Mostertz J, Waldminghaus T, Miethke M, Kock H, Hecker M. 2004; Fine-tuning in regulation of Clp protein content in Bacillus subtilis . J Bacteriol 186:179–191 [CrossRef]
    [Google Scholar]
12. Gibson T. J. 1984 Studies on the Epstein–Barr virus genome PhD thesis Cambridge University;
    [Google Scholar]
13. Gottesman S. 1996; Proteases and their targets in Escherichia coli . Annu Rev Genet 30:465–506 [CrossRef]
    [Google Scholar]
14. Gottesman S, Clark W. P, Maurizi M. R. 1990; The ATP-dependent Clp protease of Escherichia coli . Sequence of clpA and identification of a Clp-specific substrate. J Biol Chem 265:7886–7893
    [Google Scholar]
15. Gottesman S, Wickner S, Maurizi M. R. 1997; Protein quality control: triage by chaperones and proteases. Genes Dev 11:815–823 [CrossRef]
    [Google Scholar]
16. Gottesman S, Roche E, Zhou Y, Sauer R. T. 1998; The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev 12:1338–1347 [CrossRef]
    [Google Scholar]
17. Hopwood D. A, Bibb M. J, Chater K. F. 7 other editors 1985 Genetic Manipulation of Streptomyces. A Laboratory Manual Norwich: John Innes Foundation;
    [Google Scholar]
18. Jenal U, Fuchs T. 1998; An essential protease involved in bacterial cell-cycle control. EMBO J 17:5658–5669 [CrossRef]
    [Google Scholar]
19. Kelemen G. H, Brown G. L, Kormanec J, Potuckova L, Chater K. F, Buttner M. J. 1996; The positions of the sigma-factor genes, whiG and sigF , in the hierarchy controlling the development of spore chains in the aerial hyphae of Streptomyces coelicolor A3(2). Mol Microbiol 21:593–603 [CrossRef]
    [Google Scholar]
20. Laemmli U. K. 1970; Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685 [CrossRef]
    [Google Scholar]
21. Levchenko I, Luo L, Baker T. A. 1995; Disassembly of the Mu transposase tetramer by the ClpX chaperone. Genes Dev 9:2399–2408 [CrossRef]
    [Google Scholar]
22. Livak K. J, Schmittgen T. D. 2001; Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25:402–408 [CrossRef]
    [Google Scholar]
23. Mullis K. B, Faloona F. A. 1987; Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 155:335–350
    [Google Scholar]
24. Murakami T, Holt T. G, Thompson C. J. 1989; Thiostrepton-induced gene expression in Streptomyces lividans . J Bacteriol 171:1459–1466
    [Google Scholar]
25. Neher S. B, Flynn J. M, Sauer R. T, Baker T. A. 2003; Latent ClpX-recognition signals ensure LexA destruction after DNA damage. Genes Dev 17:1084–1089 [CrossRef]
    [Google Scholar]
26. Paget M. S, Molle V, Cohen G, Aharonowitz Y, Buttner M. J. 2001; Defining the disulphide stress response in Streptomyces coelicolor A3(2): identification of the sigmaR regulon. Mol Microbiol 42:1007–1020 [CrossRef]
    [Google Scholar]
27. Ririe K. M, Rasmussen R. P, Wittwer C. T. 1997; Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal Biochem 245:154–160 [CrossRef]
    [Google Scholar]
28. Saiki R. K, Gelfand D. H, Stoffel S, Scharf S. J, Higuchi R, Horn G. T, Mullis K. B, Erlich H. A. 1988; Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487–491 [CrossRef]
    [Google Scholar]
29. Schweder T, Lee K.-H, Lomovskaya O, Matin A. 1996; Regulation of Escherichia coli starvation sigma factor (σ [sup]s[/sup]) by ClpXP protease. J Bacteriol 178:470–476
    [Google Scholar]
30. Sobczyk A, Bellier A, Viala J, Mazodier P. 2002; The lon gene, encoding an ATP-dependent protease, is a novel member of the HAIR/HspR stress-response regulon in actinomycetes. Microbiology 148:1931–1937
    [Google Scholar]
31. Torres-Cabassa A. S, Gottesman S. 1987; Capsule synthesis in Escherichia coli K-12 is regulated by proteolysis. J Bacteriol 169:981–989
    [Google Scholar]
32. Viala J, Mazodier P. 2002; ClpP-dependent degradation of PopR allows tightly regulated expression of the clpP3 clpP4 operon in Streptomyces lividans . Mol Microbiol 44:633–643 [CrossRef]
    [Google Scholar]
33. Viala J, Rapoport G, Mazodier P. 2000; The clpP multigenic family in Streptomyces lividans : conditional expression of the clpP3 clpP4 operon is controlled by PopR, a novel transcriptional activator. Mol Microbiol 38:602–612 [CrossRef]
    [Google Scholar]