1887

Abstract

The Random Amplified Polymorphic DNA (RAPD) technique was used in the identification of a species-specific fragment of . A fragment of approximately 500 bp was amplified from the genome of 15 different strains, including BCG Pasteur, but was shown to be absent in 26 different mycobacteria and 20 different clinical isolates of . When the fragment was used as a probe in a Southern blot analysis, several radioactive bands common to and were observed. However, this fragment hybridized specifically to a 2900 bp RI fragment in the genome, but failed to hybridize in either or chromosomal DNA. Based on a partial nucleotide sequence of the 500 bp fragment, two oligonucleotide primers were designed and a PCR assay was developed. Using purified mycobacterial DNA samples, only and BCG rendered a unique amplification band. This PCR assay is able to detect down to 10 fg purified DNA, which corresponds roughly to two bacilli. The assay is also useful for identifying the bacilli directly from uncultured biological samples, such as milk.

Keyword(s): diagnosis , Mycobacterium bovis , PCR and RAPD
Loading

Article metrics loading...

/content/journal/micro/10.1099/13500872-141-9-2131
1995-09-01
2024-04-16
Loading full text...

Full text loading...

/deliver/fulltext/micro/141/9/mic-141-9-2131.html?itemId=/content/journal/micro/10.1099/13500872-141-9-2131&mimeType=html&fmt=ahah

References

  1. Baess I. 1979; Deoxyribonucleic acid relatedness among species of slow-growing mycobacteria.. Acta Pathol Microbiol Scand Sect B 87:221–226
    [Google Scholar]
  2. Baess I. 1983; Deoxyribonucleic acid relationships between different serovars of Mycobacterium avium, Mycobacterium intracellulare, and Mycobacterium scrojulaceum. . Acta Pathol Microbiol Scand Sect B 91:201–203
    [Google Scholar]
  3. Baess I. 1984; Determination and re-examination of genome size and base ratio of deoxyribonucleic acid from mycobacteria. . Acta Pathol Microbiol Scand Sect B 92:209–211
    [Google Scholar]
  4. Baldino F., Chesselet M.F., Lewis M.E. 1989; High resolution in situ hybridization histochemistry. . Methods Enzymol 168:761–777
    [Google Scholar]
  5. Barry T., Glennon M., Smith T., Gannon F. 1993; Detection of Mycobacterium bovis in bovine blood by combined PCR and DNA probe methods. . Vet Rec 132:66–67
    [Google Scholar]
  6. Bassam B.J., Caetano-Anollés G., Gresshoff P.M. 1992; DNA amplification fingerprinting of bacteria. . Appl Microbiol Biotechnol 38:70–76
    [Google Scholar]
  7. Brett J.L., Humble M.W. 1991; Incidence of human tuberculosis caused by Mycobacterium bovis. . NZ Med J 104:13–14
    [Google Scholar]
  8. Collins C.H., Grange J.M. 1983; The bovine tubercle bacillus.. J Appl Bacteriol 55:13–29
    [Google Scholar]
  9. Collins D.M., de Lisle G.W. 1984; DNA restriction endonuclease analysis of Mycobacterium tuberculosis and Mycobacterium bovis BCG. . J Gen Microbiol 130:1019–1021
    [Google Scholar]
  10. Collins D.M., de Lisle G.W. 1985; DNA restriction endonuclease analysis of Mycobacterium bovis and other members of the tuberculosis complex. . J Clin Microbiol 21:562–564
    [Google Scholar]
  11. Cook S.M., Bartos R.E., Pierson C.L., Frank T.S. 1994; Detection and characterization of atypical mycobacteria by the polymerase chain reaction. . Diagn Mol Pathol 3:53–58
    [Google Scholar]
  12. Cormican M.G., Flynn J. 1992; Tuberculosis in the west of Ireland ; 1986-1990 Ir J Med Sci 161:70–72
    [Google Scholar]
  13. Daniel T.M., Janicki B.W. 1978; Mycobacterial antigens: a review of the isolation, chemistry and immunological properties. . Microbiol Rev 42:84–113
    [Google Scholar]
  14. Del Portillo P., Murillo L.A., Patarroyo M.E. 1991; Amplification of a species-specific DNA fragment of Mycobacterium tuberculosis and its possible use in diagnosis. . J Clin Microbiol 29:2163–2168
    [Google Scholar]
  15. Eisenach K.D., Crawford J.T., Bates J.H. 1986; Genetic relatedness among strains of the Mycobacterium tuberculosis complex. . Am Rev Respir Dis 133:1065–1068
    [Google Scholar]
  16. Fifis T., Plackett P., Corner L.A., Wood P.R. 1989; Purification of a major Mycobacterium bovis antigen for the diagnosis of bovine tuberculosis. . Scand J Immunol 29:91–101
    [Google Scholar]
  17. Franco R., Ruiz-Trevisan A., Zorzopulos J. 1989; Development of molecular probes for the diagnosis of mycobacteria. . Rev Argent Microbiol 21:146–148
    [Google Scholar]
  18. Griffin J.F., Nagai S., Buchan G.S. 1991; Tuberculosis in domesticated red deer: comparison of purified protein derivative and the specific protein MPB70 for in vitro diagnosis. . Res Vet Sci 50:279–285
    [Google Scholar]
  19. Haas W.H., Butler W.R., Woodley C.L., Crawford J.T. 1993; Mixed-linker polymerase chain reaction: a new method for rapid fingerprinting of isolates of Mycobacterium tuberculosis complex. . J Clin Microbiol 31:1293–1298
    [Google Scholar]
  20. Hance A.J., Grandchamp B., Lévy-Frébault V., Lecossier D., Rauzier J., Bocart D., Giquel B. 1989; Detection and identification of mycobacteria by amplification of mycobacterial DNA. . Mol Microbiol 3:843–849
    [Google Scholar]
  21. Harboe M., Nagai S. 1984; MPB70 a unique antigen of Mycobacterium bovis BCG. . Am Rev Respir Dis 129:444–452
    [Google Scholar]
  22. Harboe M., Wiker H. G., Duncan J. R., Garcia M. M., Dukes T. W., Brooks B. W., Turcotte C., Nagai S. 1990; Protein G-based enzyme linked immunosorbent assay for anti-MPB70 anti- bodies in bovine tuberculosis.. J Clin Microbiol 28: 913–921
    [Google Scholar]
  23. Hermans P.W.M., Van Sooningen D., Bik E.M., De Haas P.E.W., Dale J.W., Van Embden J.D.A. 1991; Insertion element IS987 from Mycobacterium bovis BCG is located in a hotspot integration region for insertion elements in Mycobacterium tuberculosis complex strains. . Infect Immun 59:2695–2705
    [Google Scholar]
  24. Imaeda T. 1985; Deoxyribonucleic acid relatedness among selected strains of Mycobacterium tuberculosis, Mycobacterium bovis, Mycobacterium bovis BCG, Mycobacterium microti and Mycobacterium africanum. . Int J Syst Bacteriol 35:147–150
    [Google Scholar]
  25. Jayarao B.M., Bassam B.J., Caetano-Anollés G., Gresshoff P.M., Oliver S.P. 1992; Subtyping of Streptococcus uberis by DNA amplification fingerprinting. . >J Clin Microbiol 30:1347–1350
    [Google Scholar]
  26. Karlson A.G., Carr D.T. 1970; Tuberculosis caused by Mycobacterium bovis. . Ann Intern Med 73:979–983
    [Google Scholar]
  27. Maniatis T., Fritsch E.F., Sambrook J. 1982 Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  28. Mizrahi V., Huberts P., Dawes S.S., Dudding L.R. 1993; A PCR method for the sequence analysis of the gyrA,polA and rnhA gene segments from mycobacteria. . Gene 136:287–290
    [Google Scholar]
  29. Noordhoek G.T., Kolk A.H., Bjune G., Catty D., Dale J.W., Fine P.E. 1994; Sensitivity specificity of PCR for detection of Mycobacterium tuberculosis: a blind comparison study among seven laboratories. . J Clin Microbiol 32:277–284
    [Google Scholar]
  30. Palittapongarnpim P., Chomic S., Fanning A., Kunimoto D. 1993; DNA fragment length polymorphism analysis of M. tuberculosis isolates by arbitrarily primed polymerase chain reaction. . J Infect Dis 167:975–978
    [Google Scholar]
  31. Pan American Health Organization 1991 Health Conditions in the Americas 1990; 1 Scientific publication 524 Washington, DC: Pan American Health Organization;
    [Google Scholar]
  32. Parra C.A., Londoño L.P., Del Portillo P., Patarroyo M.E. 1991; Isolation, characterization, and molecular cloning of a specific Mycobacterium tuberculosis antigen gene: identification of a species-specific sequence. . Infect Immun 59:3411–3417
    [Google Scholar]
  33. Radford A.J., Duffield B., Plackett P. 1988; Cloning of a species-specific antigen of Mycobacterium bovis. . Infect Immun 56:921–925
    [Google Scholar]
  34. Saiki R.K., Gelfand D.H., Stoffel S., Scharf S.J., Higuchi R., Horn G.T., Mullis K.B., Erlich H.A. 1988; Primer directed enzymatic amplification of DNA with a thermostable DNA polymerase. . Science 239:487–491
    [Google Scholar]
  35. Sanger F., Nicklen S., Coulson A.R. 1977; DNA sequencing with chain terminating inhibitors. . Proc Natl Acad Sei USA 745463–5467
    [Google Scholar]
  36. Telenti A., Marchesi F., Balz M., Bally F., Böttger E.C., Bodmer T. 1993; Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. . J Clin Microbiol 31:175–178
    [Google Scholar]
  37. Thierry D., Cave M.D., Eisenach K.D., Crawford J.T., Bates J.H., Gicquel B., Guesdon J.L. 1990; IS6710, an IS-like element of Mycobacterium tuberculosis complex. . Nucleic Acids Res 18:188
    [Google Scholar]
  38. Welsh J., McClelland M. 1990; Fingerprinting genomes using PCR with arbitrary primers.. Nucleic Acids Res 18:7213–7218
    [Google Scholar]
  39. Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. 1990; DNA polymorphism amplified by arbitrary primers are useful as genetic markers.. Nucleic Acids Res 18:6531–6535
    [Google Scholar]
  40. Zainuddin Z.F., Dale J.W. 1989; Polymorphic repetitive DNA sequences inMycobacterium tuberculosis detected with a gene probe from aMycobacterium fortuitum plasmid.. J Gen Microbiol 135:2347–2355
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/13500872-141-9-2131
Loading
/content/journal/micro/10.1099/13500872-141-9-2131
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error