1887

Abstract

While many bacteria, such as and , harbour a single-copy chromosome, freshwater cyanobacteria have multiple copies of each chromosome per cell. Although it has been reported that multi-copy chromosomes are evenly distributed along the major axis of the cell in cyanobacterium PCC 7942, the distribution mechanism of these chromosomes remains unclear. In , the carboxysome, a metabolic microcompartment for carbon fixation that is distributed in a similar manner to the multi-copy chromosomes, is regulated by ParA-like protein (hereafter ParA). To elucidate the role of ParA in the distribution of multi-copy chromosomes, we constructed and analysed ParA disruptant and overexpressing strains of . Our fluorescence hybridization assay revealed that the disruptants displayed an aberrant distribution of their multi-copy chromosomes. In the disruptant the multiple origin and terminus foci, corresponding to the intracellular position of each chromosomal region, were aggregated, which was compensated by the expression of exogenous ParA from other genomic loci. The disruptant is sensitive to UV-C compared to the WT strain. Additionally, giant cells appeared under ParA overexpression at the late stage of growth indicating that excess ParA indirectly inhibits cell division. Screening of the ParA-interacting proteins by yeast two-hybrid analysis revealed four candidates that are involved in DNA repair and cell membrane biogenesis. These results suggest that ParA is involved in the pleiotropic cellular functions with these proteins, while is dispensable for cell viability in .

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2018-01-01
2024-04-20
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References

  1. Binder BJ, Chisholm SW. Cell cycle regulation in marine Synechococcus sp. strains. Appl Environ Microbiol 1995; 61:708–717[PubMed]
    [Google Scholar]
  2. Labarre J, Chauvat F, Thuriaux P. Insertional mutagenesis by random cloning of antibiotic resistance genes into the genome of the cyanobacterium Synechocystis strain PCC 6803. J Bacteriol 1989; 171:3449–3457 [View Article][PubMed]
    [Google Scholar]
  3. Mann N, Carr NG. Control of macromolecular composition and cell division in the blue-green algae Anacystis nidulans. J Gen Microbiol 1974; 83:399–405 [View Article][PubMed]
    [Google Scholar]
  4. Griese M, Lange C, Soppa J. Ploidy in cyanobacteria. FEMS Microbiol Lett 2011; 323:124–131 [View Article][PubMed]
    [Google Scholar]
  5. Watanabe S, Ohbayashi R, Kanesaki Y, Saito N, Chibazakura T et al. Intensive DNA replication and metabolism during the lag phase in cyanobacteria. PLoS One 2015; 10:e0136800 [View Article][PubMed]
    [Google Scholar]
  6. Watanabe S, Ohbayashi R, Shiwa Y, Noda A, Kanesaki Y et al. Light-dependent and asynchronous replication of cyanobacterial multi-copy chromosomes. Mol Microbiol 2012; 83:856–865 [View Article][PubMed]
    [Google Scholar]
  7. Chen AH, Afonso B, Silver PA, Savage DF. Spatial and temporal organization of chromosome duplication and segregation in the cyanobacterium Synechococcus elongatus PCC 7942. PLoS One 2012; 7:e47837 [View Article][PubMed]
    [Google Scholar]
  8. Jain IH, Vijayan V, O'Shea EK. Spatial ordering of chromosomes enhances the fidelity of chromosome partitioning in cyanobacteria. Proc Natl Acad Sci USA 2012; 109:13638–13643 [View Article][PubMed]
    [Google Scholar]
  9. Lutkenhaus J. The ParA/MinD family puts things in their place. Trends Microbiol 2012; 20:411–418 [View Article][PubMed]
    [Google Scholar]
  10. Lee PS, Grossman AD. The chromosome partitioning proteins Soj (ParA) and Spo0J (ParB) contribute to accurate chromosome partitioning, separation of replicated sister origins, and regulation of replication initiation in Bacillus subtilis. Mol Microbiol 2006; 60:853–869 [View Article][PubMed]
    [Google Scholar]
  11. Real G, Autret S, Harry EJ, Errington J, Henriques AO. Cell division protein DivIB influences the Spo0J/Soj system of chromosome segregation in Bacillus subtilis. Mol Microbiol 2005; 55:349–367 [View Article][PubMed]
    [Google Scholar]
  12. Ptacin JL, Lee SF, Garner EC, Toro E, Eckart M et al. A spindle-like apparatus guides bacterial chromosome segregation. Nat Cell Biol 2010; 12:791–798 [View Article][PubMed]
    [Google Scholar]
  13. Shebelut CW, Guberman JM, van Teeffelen S, Yakhnina AA, Gitai Z. Caulobacter chromosome segregation is an ordered multistep process. Proc Natl Acad Sci USA 2010; 107:14194–14198 [View Article][PubMed]
    [Google Scholar]
  14. Vallet-Gely I, Boccard F. Chromosomal organization and segregation in Pseudomonas aeruginosa. PLoS Genet 2013; 9:e1003492 [View Article][PubMed]
    [Google Scholar]
  15. Fogel MA, Waldor MK. A dynamic, mitotic-like mechanism for bacterial chromosome segregation. Genes Dev 2006; 20:3269–3282 [View Article][PubMed]
    [Google Scholar]
  16. Kadoya R, Baek JH, Sarker A, Chattoraj DK. Participation of chromosome segregation protein ParAI of Vibrio cholerae in chromosome replication. J Bacteriol 2011; 193:1504–1514 [View Article][PubMed]
    [Google Scholar]
  17. Roberts MA, Wadhams GH, Hadfield KA, Tickner S, Armitage JP. ParA-like protein uses nonspecific chromosomal DNA binding to partition protein complexes. Proc Natl Acad Sci USA 2012; 109:6698–6703 [View Article][PubMed]
    [Google Scholar]
  18. Savage DF, Afonso B, Chen AH, Silver PA. Spatially ordered dynamics of the bacterial carbon fixation machinery. Science 2010; 327:1258–1261 [View Article][PubMed]
    [Google Scholar]
  19. Thompson SR, Wadhams GH, Armitage JP. The positioning of cytoplasmic protein clusters in bacteria. Proc Natl Acad Sci USA 2006; 103:8209–8214 [View Article][PubMed]
    [Google Scholar]
  20. Cannon GC, Bradburne CE, Aldrich HC, Baker SH, Heinhorst S et al. Microcompartments in prokaryotes: carboxysomes and related polyhedra. Appl Environ Microbiol 2001; 67:5351–5361 [View Article][PubMed]
    [Google Scholar]
  21. Long BM, Badger MR, Whitney SM, Price GD. Analysis of carboxysomes from Synechococcus PCC7942 reveals multiple Rubisco complexes with carboxysomal proteins CcmM and CcaA. J Biol Chem 2007; 282:29323–29335 [View Article][PubMed]
    [Google Scholar]
  22. Possoz C, Filipe SR, Grainge I, Sherratt DJ. Tracking of controlled Escherichia coli replication fork stalling and restart at repressor-bound DNA in vivo. Embo J 2006; 25:2596–2604 [View Article][PubMed]
    [Google Scholar]
  23. Watanabe S, Kobayashi T, Saito M, Sato M, Nimura-Matsune K et al. Studies on the role of HtpG in the tetrapyrrole biosynthesis pathway of the cyanobacterium Synechococcus elongatus PCC 7942. Biochem Biophys Res Commun 2007; 352:36–41 [View Article][PubMed]
    [Google Scholar]
  24. Yoshimura M, Asai K, Sadaie Y, Yoshikawa H. Interaction of Bacillus subtilis extracytoplasmic function (ECF) sigma factors with the N-terminal regions of their potential anti-sigma factors. Microbiology 2004; 150:591–599 [View Article][PubMed]
    [Google Scholar]
  25. Dutheil J, Saenkham P, Sakr S, Leplat C, Ortega-Ramos M et al. The AbrB2 autorepressor, expressed from an atypical promoter, represses the hydrogenase operon to regulate hydrogen production in Synechocystis strain PCC6803. J Bacteriol 2012; 194:5423–5433 [View Article][PubMed]
    [Google Scholar]
  26. Eckert C, Boehm M, Carrieri D, Yu J, Dubini A et al. Genetic analysis of the Hox hydrogenase in the cyanobacterium Synechocystis sp. PCC 6803 reveals subunit roles in association, assembly, maturation, and function. J Biol Chem 2012; 287:43502–43515 [View Article][PubMed]
    [Google Scholar]
  27. Symmons MF, Marshall RL, Bavro VN. Architecture and roles of periplasmic adaptor proteins in tripartite efflux assemblies. Front Microbiol Rev 2015; 6:513
    [Google Scholar]
  28. van Heijenoort J. Peptidoglycan hydrolases of Escherichia coli. Microbiol Mol Biol Rev 2011; 75:636–663 [View Article][PubMed]
    [Google Scholar]
  29. Graumann PL, Knust T. Dynamics of the bacterial SMC complex and SMC-like proteins involved in DNA repair. Chromosome Res 2009; 17:265–275 [View Article][PubMed]
    [Google Scholar]
  30. Hester CM, Lutkenhaus J. Soj (ParA) DNA binding is mediated by conserved arginines and is essential for plasmid segregation. Proc Natl Acad Sci USA 2007; 104:20326–20331 [View Article][PubMed]
    [Google Scholar]
  31. Leonard TA, Butler PJ, Löwe J. Bacterial chromosome segregation: structure and DNA binding of the Soj dimer–a conserved biological switch. Embo J 2005; 24:270–282 [View Article][PubMed]
    [Google Scholar]
  32. Graumann PL. SMC proteins in bacteria: condensation motors for chromosome segregation?. Biochimie 2001; 83:53–59 [View Article][PubMed]
    [Google Scholar]
  33. Domain F, Houot L, Chauvat F, Cassier-Chauvat C. Function and regulation of the cyanobacterial genes lexA, recA and ruvB: LexA is critical to the survival of cells facing inorganic carbon starvation. Mol Microbiol 2004; 53:65–80 [View Article][PubMed]
    [Google Scholar]
  34. Rastogi RP, Sinha RP, Moh SH, Lee TK, Kottuparambil S et al. Ultraviolet radiation and cyanobacteria. J Photochem Photobiol B 2014; 141:154–169 [View Article][PubMed]
    [Google Scholar]
  35. Rowlett VW, Margolin W. The bacterial Min system. Curr Biol 2013; 23:R553–R556 [View Article][PubMed]
    [Google Scholar]
  36. Shih YL, Zheng M. Spatial control of the cell division site by the Min system in Escherichia coli. Environ Microbiol 2013; 15:3229–3239 [View Article][PubMed]
    [Google Scholar]
  37. Marston AL, Errington J. Selection of the midcell division site in Bacillus subtilis through MinD-dependent polar localization and activation of MinC. Mol Microbiol 1999; 33:84–96 [View Article][PubMed]
    [Google Scholar]
  38. Iwai N, Nagai K, Wachi M. Novel S-benzylisothiourea compound that induces spherical cells in Escherichia coli probably by acting on a rod-shape-determining protein(s) other than penicillin-binding protein 2. Biosci Biotechnol Biochem 2002; 66:2658–2662 [View Article][PubMed]
    [Google Scholar]
  39. Kruse T, Gerdes K. Bacterial DNA segregation by the actin-like MreB protein. Trends Cell Biol 2005; 15:343–345 [View Article][PubMed]
    [Google Scholar]
  40. Srivastava P, Demarre G, Karpova TS, Mcnally J, Chattoraj DK. Changes in nucleoid morphology and origin localization upon inhibition or alteration of the actin homolog, MreB, of Vibrio cholerae. J Bacteriol 2007; 189:7450–7463 [View Article][PubMed]
    [Google Scholar]
  41. Hu B, Yang G, Zhao W, Zhang Y, Zhao J. MreB is important for cell shape but not for chromosome segregation of the filamentous cyanobacterium Anabaena sp. PCC 7120. Mol Microbiol 2007; 63:1640–1652 [View Article][PubMed]
    [Google Scholar]
  42. Schneider D, Fuhrmann E, Scholz I, Hess WR, Graumann PL. Fluorescence staining of live cyanobacterial cells suggest non-stringent chromosome segregation and absence of a connection between cytoplasmic and thylakoid membranes. BMC Cell Biol 2007; 8:39 [View Article][PubMed]
    [Google Scholar]
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