Cloning and heterologous expression of a novel ligninolytic peroxidase gene from poroid brown-rot fungus Antrodia cinnamomea

References

1. Alic M., Akileswaran L., Gold M. H. 1997; Characterization of the gene encoding manganese peroxidase isozyme 3 from Phanerochaete chrysosporium . Biochim Biophys Acta 13381–7
   [Google Scholar]
2. Ambert-Balay K., Dougherty M., Tien M. 2000; Reactivity of manganese peroxidase: site-directed mutagenesis of residues in proximity to the porphyrin ring. Arch Biochem Biophys 382:89–94
   [Google Scholar]
3. Camarero S., Ruiz-Duenas F. J., Sarkar S., Martinez M. J., Martinez A. T. 2000; The cloning of a new peroxidase found in lignocellulose cultures of Pleurotus eryngii and sequence comparison with other fungal peroxidases. FEMS Microbiol Lett 191:37–43
   [Google Scholar]
4. Chang T. T., Chou W. N. 1995; Antrodia cinnamomea sp. nov. on Cinnamomum kanehirai in Taiwan. Mycol Res 99:756–758
   [Google Scholar]
5. Chen C. H., Yang S. W., Shen Y. C. 1995; New steroid acids from Antrodia cinnamomea , a fungal parasite of Cinnamomum micranthum . J Nat Prod 58:1655–1661
   [Google Scholar]
6. Cherng I.-H., Chiang H.-C., Cheng M.-C., Wang Y. 1995; Three new triterpenoids from Antrodia cinnamomea . J Nat Prod 58:365–371
   [Google Scholar]
7. Davidson R. W., Campbell W. A., Blaisdell D. J. 1938; Differentiation of wood-decaying fungi by their reactions on gallic or tannic acid medium. J Agric Res 57:683–695
   [Google Scholar]
8. Dingle J., Reid W. W., Solomons G. L. 1953; The enzymic degradation of pectin and other polysaccharides. II. Application of the cup-plate assay to the estimation of enzymes. J Sci Food Agric 4:149–155
   [Google Scholar]
9. Doyle W. A., Smith A. T. 1996; Expression of lignin peroxidase H8 in Escherichia coli : folding and activation of the recombinant enzyme with Ca²⁺ and haem. Biochem J 315:15–19
   [Google Scholar]
10. D'Souza T. M., Boominathan K., Reddy C. A. 1996; Isolation of laccase gene-specific sequences from white rot and brown rot fungi by PCR. Appl Environ Microbiol 62:3739–3744
    [Google Scholar]
11. Gilbertson R. L. 1980; Wood-rotting fungi of North America. Mycologia 72:1–49
    [Google Scholar]
12. Godfrey B. J., Mayfield M. B., Brown J. A., Gold M. H. 1990; Characterization of a gene encoding a manganese peroxidase from Phanerochaete chrysosporium . Gene 93:119–124
    [Google Scholar]
13. Gold M. H., Alic M. 1993; Molecular biology of the lignin-degrading basidiomycete Phanerochaete chrysosporium . Microbiol Rev 57:605–622
    [Google Scholar]
14. Han H. F., Nakamura N., Zuo F., Hirakawa A., Yokozawa T., Hattori M. 2006; Protective effects of a neutral polysaccharide isolated from the mycelium of Antrodia cinnamomea on Propionibacterium acnes and lipopolysaccharide induced hepatic injury in mice. Chem Pharm Bull (Tokyo 54:496–500
    [Google Scholar]
15. Heinfling A., Ruiz-Duenas F. J., Martinez M. J., Bergbauer M., Szewzyk U., Martinez A. T. 1998; A study on reducing substrates of manganese-oxidizing peroxidases from Pleurotus eryngii and Bjerkandera adusta . FEBS Lett 428:141–146
    [Google Scholar]
16. Hibbett D. S., Donoghue M. J. 2001; Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Syst Biol 50:215–242
    [Google Scholar]
17. Hilden K., Martinez A. T., Hatakka A., Lundell T. 2005; The two manganese peroxidases Pr-MnP2 and Pr-MnP3 of Phlebia radiata , a lignin-degrading basidiomycete, are phylogenetically and structurally divergent. Fungal Genet Biol 42:403–419
    [Google Scholar]
18. Hsiao G., Shen M. Y., Lin K. H., Lan M. H., Wu L. Y., Chou D. S., Lin C. H., Su C. H., Sheu J. R. 2003; Antioxidative and hepatoprotective effects of Antrodia camphorata extract. J Agric Food Chem 51:3302–3308
    [Google Scholar]
19. Hsu Y. L., Kuo Y. C., Kuo P. L., Ng L. T., Kuo Y. H., Lin C. C. 2005; Apoptotic effects of extract from Antrodia camphorata fruiting bodies in human hepatocellular carcinoma cell lines. Cancer Lett 221:77–89
    [Google Scholar]
20. Hu J. M., Fu H. C., Lin C. H., Su H. J., Yeh H. H. 2007; Reassortment and concerted evolution in banana bunchy top virus genomes. J Virol 81:1746–1761
    [Google Scholar]
21. Hurles M. 2004; Gene duplication: the genomic trade in spare parts. PLoS Biol 2:E206
    [Google Scholar]
22. Kirk T. K., Farrell R. L. 1987; Enzymatic ‘combustion’: the microbial degradation of lignin. Annu Rev Microbiol 41:465–505
    [Google Scholar]
23. Kishi K., Kusters-van Someren M., Mayfield M. B., Sun J., Loehr T. M., Gold M. H. 1996; Characterization of manganese(II) binding site mutants of manganese peroxidase. Biochemistry 35:8986–8994
    [Google Scholar]
24. Kishi K., Hildebrand D. P., Kusters-van Someren M., Gettemy J., Mauk A. G., Gold M. H. 1997; Site-directed mutations at phenylalanine-190 of manganese peroxidase: effects on stability, function, and coordination. Biochemistry 36:4268–4277
    [Google Scholar]
25. Lynch M., Conery J. S. 2000; The evolutionary fate and consequences of duplicate genes. Science 290:1151–1155
    [Google Scholar]
26. Martinez A. T. 2002; Molecular biology and structure–function of lignin-degrading heme peroxidases. Enzyme Microb Technol 30:425–444
    [Google Scholar]
27. Martinez M. J., Piontek K., Martinez A. T. 2005; Versatile peroxidase oxidation of high redox potential aromatic compounds: site-directed mutagenesis, spectroscopic and crystallographic investigation of three long-range electron transfer pathways. J Mol Biol 354:385–402
    [Google Scholar]
28. Moore R. C., Purugganan M. D. 2003; The early stages of duplicate gene evolution. Proc Natl Acad Sci U S A 100:15682–15687
    [Google Scholar]
29. Morgenstern I., Klopman S., Hibbett D. S. 2008; Molecular evolution and diversity of lignin degrading heme peroxidases in the Agaricomycetes. J Mol Evol 66:243–257
    [Google Scholar]
30. Nobles M. K. 1965; Identification of cultures of wood-inhabiting hymenomycetes. Can J Bot 43:1097–1139
    [Google Scholar]
31. Perez-Boada M., Ruiz-Duenas F. J., Pogni R., Basosi R., Choinowski T., Martinez M. J., Piontek K., Martinez A. T. 2005; Versatile peroxidase oxidation of high redox potential aromatic compounds: site-directed mutagenesis, spectroscopic and crystallographic investigation of three long-range electron transfer pathways. J Mol Biol 354:385–402
    [Google Scholar]
32. Piontek K., Glumoff T., Winterhalter K. 1993; Low pH crystal structure of glycosylated lignin peroxidase from Phanerochaete chrysosporium at 2.5 Å resolution. FEBS Lett 315:119–124
    [Google Scholar]
33. Piontek K., Smith A. T., Blodig W. 2001; Lignin peroxidase structure and function. Biochem Soc Trans 29:111–116
    [Google Scholar]
34. Ruiz-Duenas F. J., Martinez M. J., Martinez A. T. 1999; Molecular characterization of a novel peroxidase isolated from the ligninolytic fungus Pleurotus eryngii . Mol Microbiol 31:223–235
    [Google Scholar]
35. Ruiz-Duenas F. J., Camarero S., Perez-Boada M., Martinez M. J., Martinez A. T. 2001; A new versatile peroxidase from Pleurotus . Biochem Soc Trans 29:116–122
    [Google Scholar]
36. Sambrook J., Russell D. W. 2001 Molecular Cloning : a Laboratory Manual , 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
37. Sollewijn Gelpke M. D., Mayfield-Gambill M., Lin Cereghino G. P., Gold M. H. 1999; Homologous expression of recombinant lignin peroxidase in Phanerochaete chrysosporium . Appl Environ Microbiol 65:1670–1674
    [Google Scholar]
38. Stewart P., Whitwam R. E., Kersten P. J., Cullen D., Tien M. 1996; Efficient expression of a Phanerochaete chrysosporium manganese peroxidase gene in Aspergillus oryzae . Appl Environ Microbiol 62:860–864
    [Google Scholar]
39. Sundaramoorthy M., Kishi K., Gold M. H., Poulos T. L. 1994; The crystal structure of manganese peroxidase from Phanerochaete chrysosporium at 2.06 Å resolution. J Biol Chem 269:32759–32767
    [Google Scholar]
40. Swofford D. L. 2002 paup: *Phylogenetic Analysis Using Parsimony (*and other methods), version 4.0 beta10 Sunderland, MA: Sinauer Associates;
    [Google Scholar]
41. Szklarz G. D., Antibus R. K., Sinsabaugh R. L., Linkins A. E. 1989; Production of phenol oxidases and peroxidases by wood-rotting fungi. Mycologia 81:234–240
    [Google Scholar]
42. Tien M., Kirk T. K. 1983; Lignin-degrading enzyme from the hymenomycete Phanerochaete chrysosporium burds. Science 221:661–662
    [Google Scholar]
43. Tien M., Kirk T. K. 1984; Lignin-degrading enzyme from Phanerochaete chrysosporium: purification, characterization, and catalytic properties of a unique H₂O₂-requiring oxygenase. Proc Natl Acad Sci U S A 81:2280–2284
    [Google Scholar]
44. Tien M., Kirk T. K. 1988; Lignin peroxidase of Phanerochaete chrysosporium . Methods Enzymol 161:238–249
    [Google Scholar]
45. Worrall J. J., Anagnost S. E., Zabel R. A. 1997; Comparison of wood decay among diverse lignicolous fungi. Mycologia 89:199–219
    [Google Scholar]
46. Wu S. Y., Kao Y. T., Chang S. T. 2003; Antifungal activities of extracts and essential oil's constituents from Cinnamomum kanehirae . Forest Prod Indust 22:197–204
    [Google Scholar]
47. Wu H., Pan C. L., Yao Y. C., Chang S. S., Li S. L., Wu T. F. 2006; Proteomic analysis of the effect of Antrodia camphorata extract on human lung cancer A549 cell. Proteomics 6:826–835
    [Google Scholar]
48. Zhang J. 2003; Evolution by gene duplication: an update. Trends Ecol Evol 18:292–298
    [Google Scholar]