1887

Abstract

The periplasmic nitrate reductase of is important during anaerobic growth in low-nitrate environments. The operon encoding this nitrate reductase comprises seven genes including a gene, , that encodes a putative cytoplasmic iron–sulphur protein of uncertain subcellular location and function. In this study, N-terminal sequence analysis, cell fractionation coupled with immunoblotting and construction of LacZ and PhoA fusion proteins were used together to establish that NapF is located in the cytoplasm. A bacterial two-hybrid protein–protein interaction system was used to demonstrate that NapF interacted in the cytoplasm with the terminal oxidoreductase NapA, but that it did not self-associate or interact with other electron-transport components of the Nap system, NapC, NapG or NapH, or with another cytoplasmic component, NapD. NapF, purified as a His-tagged protein, exhibited spectral properties characteristic of an iron–sulphur protein. This protein was able to pull down NapA from soluble extracts of . A growth-based assay for NapF function in intact cell cultures was developed and applied to assess the effect of mutation of a number of conserved amino acids. It emerged that neither a highly conserved N-terminal double-arginine motif, nor a conserved proline motif, is essential for NapF-dependent growth. The combined data indicate that NapF plays one or more currently unidentified roles in the post-translational modification of NapA prior to the export of folded NapA via the twin-arginine translocation pathway into the periplasm.

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2006-11-01
2024-04-16
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References

  1. Berks B. C, Ferguson S. J, Moir J. W, Richardson D. J. 1995a; Enzymes and associated electron transport systems that catalyse the respiratory reduction of nitrogen oxides and oxyanions. Biochim Biophys Acta 1232:97–173 [CrossRef]
    [Google Scholar]
  2. Berks B. C, Richardson D. J, Reilly A. R, Willis A, Ferguson S. J. 1995b; The napEDABC gene cluster encoding the periplasmic nitrate reductase system of Thiosphaera pantotropha . Biochem J 309:983–992
    [Google Scholar]
  3. Berks B. C, Sargent F, Palmer T. 2000; The Tat protein export pathway. Mol Microbiol 35:260–274 [CrossRef]
    [Google Scholar]
  4. Blasco F, Iobbi C, Ratouchniak J, Bonnefoy V, Chippaux M. 1990; Nitrate reductases of Escherichia coli : sequence of the second nitrate reductase and comparison with that encoded by the narGHJI operon. Mol Gen Genet 222:104–111
    [Google Scholar]
  5. Bolivar F, Rodriguez R. L, Greene P. J, Betlach M. C, Heyneke N. L, Boyer H. W, Crosa J. H, Falkow S. 1977; Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene 2:95–113 [CrossRef]
    [Google Scholar]
  6. Brondijk T. H, Fiegen D, Richardson D. J, Cole J. A. 2002; Roles of NapF, NapG and NapH, subunits of the Escherichia coli periplasmic nitrate reductase, in ubiquinol oxidation. Mol Microbiol 44:245–255 [CrossRef]
    [Google Scholar]
  7. Brondijk T. H. C, Nilavongse A, Filenko N, Richardson D. J, Cole J. A. 2004; The NapGH components of the periplasmic nitrate reductase of Escherichia coli K-12: location, topology, and physiological roles in quinol oxidation and redox balancing. Biochem J 379:47–55 [CrossRef]
    [Google Scholar]
  8. Clegg S. J, Jia W, Cole J. A. 2006; Role of the Escherichia coli nitrate transport protein, NarU, during severe nutrient starvation and slow growth. Microbiology 152:2091–2100 [CrossRef]
    [Google Scholar]
  9. Grove J, Tanapongpipat S, Thomas G, Griffiths L, Crooke H, Cole J. 1996; Escherichia coli K-12 genes essential for the synthesis of c -type cytochromes and a third nitrate reductase located in the periplasm. Mol Microbiol 19:476–481
    [Google Scholar]
  10. Iobbi C, Santini C. L, Bonnefoy V, Giordano G. 1987; Biochemical and immunological evidence for a second nitrate reductase in Escherichia coli K12. Eur J Biochem 168:451–459 [CrossRef]
    [Google Scholar]
  11. Iobbi-Nivol C, Santini C. L, Blasco F, Giordano G. 1990; Purification and further characterization of the second nitrate reductase of Escherichia coli K12. Eur J Biochem 188:679–687 [CrossRef]
    [Google Scholar]
  12. Jayaraman P.-S, Peakman T. C, Busby S. J. W, Quincey R. V, Cole J. A. 1987; Location and sequence of the promoter of the gene for the NADH-dependent nitrite reductase of Escherichia coli and its regulation by oxygen, the Fnr protein and nitrite. J Mol Biol 196:781–788 [CrossRef]
    [Google Scholar]
  13. Karimova G, Pidoux J, Ullmann A, Ladant D. 1998; A bacterial two-hybrid system based on a reconstituted signal transduction pathway. Proc Natl Acad Sci U S A 95:5752–5756 [CrossRef]
    [Google Scholar]
  14. Karimova G, Ullmann A, Ladant D. 2000; A bacterial two-hybrid system that exploits a cAMP signaling cascade in Escherichia coli . Methods Enzymol 328:59–73
    [Google Scholar]
  15. Kim H. R, Lee Y. C, Won J. S, Choe M. H. 2003; AAS and ICP-AES analysis of the iron–sulfur cluster in YojG (NapF) protein of aeg-46.5 operon in Escherichia coli . Bull Korean Chem Soc 24:1849–1852 [CrossRef]
    [Google Scholar]
  16. Ladant D, Ullmann A. 1999; Bordetella pertussis adenylate cyclase: a toxin with multiple talents. Trends Microbiol 7:172–176 [CrossRef]
    [Google Scholar]
  17. Manoil C. 1991; Analysis of membrane protein topology using alkaline phosphatase and beta-galactosidase gene fusions. Methods Cell Biol 34:61–75
    [Google Scholar]
  18. Minton N. P. 1984; Improved plasmid vectors for the isolation of translational lac gene fusions. Gene 31:269–273 [CrossRef]
    [Google Scholar]
  19. Olmo-Mira F, Richardson D. J, Castillo F, Moreno-Vivian C, Roldan D. 2004; NapF is a cytoplasmic iron-sulfur protein required for Fe-S cluster assembly in the periplasmic nitrate reductase. J Biol Chem 279:49727–49735 [CrossRef]
    [Google Scholar]
  20. Paulsen I. T, Brown M. H, Dunstan S. J, Skurray R. A. 1995; Molecular characterization of the staphylococcal multidrug resistance export protein QacC. J Bacteriol 177:2827–2833
    [Google Scholar]
  21. Pope N. R, Cole J. A. 1984; Pyruvate and ethanol as electron donors for nitrite reduction by Escherichia coli K12. J Gen Microbiol 130:1279–1284
    [Google Scholar]
  22. Potter L. C, Cole J. A. 1999; Essential roles for the products of the napABCD genes, but not napFGH , in periplasmic nitrate reduction by Escherichia coli K-12. Biochem J 344:69–76 [CrossRef]
    [Google Scholar]
  23. Potter L. C, Millington P, Griffiths L, Thomas G. H, Cole J. A. 1999; Competition between Escherichia coli strains expressing either a periplasmic or a membrane-bound nitrate reductase: does Nap confer a selective advantage during nitrate-limited growth?. Biochem J 344:77–84 [CrossRef]
    [Google Scholar]
  24. Reyes F, Roldan M. D, Klipp W, Castillo F, Moreno-Vivian C. 1996; Isolation of periplasmic nitrate reductase genes from Rhodobacter sphaeroides DSM 158: structural and functional differences among prokaryotic nitrate reductases. Mol Microbiol 19:1307–1318 [CrossRef]
    [Google Scholar]
  25. Reyes F, Gavira M, Castillo F, Moreno-Vivian C. 1998; Periplasmic nitrate-reducing system of the phototrophic bacterium Rhodobacter sphaeroides DSM 158: transcriptional and mutational analysis of the napKEFDABC gene cluster. Biochem J 331:897–904
    [Google Scholar]
  26. Richardson D. J, Ferguson S. J. 1992; The influence of carbon substrate on the activity of the periplasmic nitrate reductase in aerobically grown Thiospaera pantotropha . Arch Microbiol 157:535–537
    [Google Scholar]
  27. Santini C. L, Ize B, Chanal A, Muller M, Giordano G, Wu L. F. 1998; A novel Sec-independent periplasmic protein translocation pathway in Escherichia coli . EMBO J 17:101–112 [CrossRef]
    [Google Scholar]
  28. Sears H. J, Sawers G, Berks B. C, Ferguson S. J, Richardson D. J. 2000; Control of periplasmic nitrate reductase gene expression (napEDABC) from Paracoccus pantotrophus in response to oxygen and carbon substrates. Microbiology 146:2977–2985
    [Google Scholar]
  29. Simon J, Sanger M, Schuster S. C, Cross R. 2003; Electron transport to periplasmic nitrate reductase (NapA) of Wolinella succinogenes is independent of a NapC protein. Mol Microbiol 49:69–75 [CrossRef]
    [Google Scholar]
  30. Soballe B, Poole R. K. 1999; Microbial ubiquinones: multiple roles in respiration, gene regulation and oxidative stress management. Microbiology 145:1817–1830 [CrossRef]
    [Google Scholar]
  31. Stanley N. R, Sargent F, Buchanan G, Shi J, Stewart V, Palmer T, Berks B. C. 2002; Behaviour of topological marker proteins targeted to the Tat protein transport pathway. Mol Microbiol 43:1005–1021 [CrossRef]
    [Google Scholar]
  32. Stewart V. 1988; Nitrate respiration in relation to facultative metabolism in enterobacteria. Microbiol Rev 52:190–232
    [Google Scholar]
  33. Stewart V, Lu Y, Darwin A. J. 2002; Periplasmic nitrate reductase (NapABC enzyme) supports anaerobic respiration in Escherichia coli K-12. J Bacteriol 184:1314–1323 [CrossRef]
    [Google Scholar]
  34. Unden G. 1988; Differential roles for menaquinone and demethylmenaquinone in anaerobic electron transport of E. coli and their fnr -independent expression. Arch Microbiol 150:499–503 [CrossRef]
    [Google Scholar]
  35. Wang H, Tseng C. P, Gunsalus R. P. 1999; The napF and narG nitrate reductase operons in Escherichia coli are differentially expressed in response to submicromolar concentrations of nitrate but not nitrite. J Bacteriol 184:5303–5308
    [Google Scholar]
  36. Weiner J. H, Bilous P. T, Shaw G. M, Lubitz S. P, Frost L, Thomas G. H, Cole J. A, Turner R. J. 1998; A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins. Cell 93:93–101 [CrossRef]
    [Google Scholar]
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