The giant linear plasmid pHG207 from Rhodococcus sp. encoding hydrogen autotrophy: characterization of the plasmid and its termini

References

1. Anand R. 1986; Pulsed field gelelectrophoresis: a technique for fractionating large DNA molecules.. Trends in Genetics 2:278–283
   [Google Scholar]
2. Ausubel F.M., Brent R., Kingston R.E., More D.D., Seidman J.G., Smith J.A., Struhl K. 1987 Current Protocols in Molecular Biology. New York: J. Wiley and Sons.;
   [Google Scholar]
3. Devereux J., Haeberli P., Smithies O. 1984; A comprehensive set of sequence analysis programs for the VAX.. Nucleic Acids Research 12:387–395
   [Google Scholar]
4. Ecker C., Reh M., Schlegel H.G. 1986; Enzymes of the autotrophic pathway in mating partners and transconjugants of Nocardia opaca lb and Rhodococcus erythropolis. . Archives of Microbiology 145:280–286
   [Google Scholar]
5. Fawcett T.W., Bartlett S.G. 1990; An effective method for eliminating ‘artifact banding’ when sequencing double-stranded DNA templates.. BioTechniques 9:46–49
   [Google Scholar]
6. Hirochika H., Nakamura K., Sakaguchi K. 1984; A linear DNA plasmid from Streptomyces rochei with inverted terminal repetition of 614 base pairs.. EMBO Journal 3:761–766
   [Google Scholar]
7. Holmes D.S., Quigley M. 1981; A rapid boiling method for preparation of bacterial plasmids.. Analytical Biochemistry 114:193–197
   [Google Scholar]
8. Ito J. 1978; Bacteriophage Phi29 terminal protein: its association with the 5’ termini of the Phi29 genome.. Journal of Virology 28:895–904
   [Google Scholar]
9. Kalkus J., Reh M., Schlegel H.G. 1990; Hydrogen autotrophy of Nocardia opaca strains is encoded by linear megaplasmids.. Journal of General Microbiology 136:1145–1151
   [Google Scholar]
10. Khandjian E.W. 1987; Optimized hybridization of DNA blotted and fixed to nitrocellulose and nylon membranes.. Bio/Technology 5:165–167
    [Google Scholar]
11. Kinashi H., Shimaji-Murayama M. 1991; Physical character�ization of SCP1, a giant linear plasmid from Streptomyces coelicolor. . Journal of Bacteriology 173:1523–1529
    [Google Scholar]
12. Kinashi H., Shimaji-Murayama M., Hanafusa T. 1991; Nucleotide sequence analysis of the unusually long terminal inverted repeats of a giant linear plasmid, SCP1.. Plasmid 26:123–130
    [Google Scholar]
13. Mcclelland M., Jones R., Patel Y. 1987; Restriction endonucleases for pulsed field mapping of bacterial genomes.. Nucleic Acids Research 15:5985–6005
    [Google Scholar]
14. Marusyk R., Sergeant A. 1980; A simple method for dialysis of small-volume samples.. Analytical Biochemistry 105:403–404
    [Google Scholar]
15. Oelmüller U., Krüger N., Steinbüchel A., Friedrich C.G. 1990; Isolation of prokaryotic RNA and detection of specific messenger-RNA with biotinylated probes.. Journal of Microbiological Methods 11:72–81
    [Google Scholar]
16. Reh M. 1981; Chemolithoautotrophy as an autonomous and transferable property of Nocardia opaca lb.. Zentralblatt für Bakteriologie, Mikrobiologie und Hygiene (Abteilung 1, Supplement) 11:577–583
    [Google Scholar]
17. Reh M., Schlegel H.G. 1975; Chemolithoautotrophie als eine übertragbare, autonome Eigenschaft von Nocardia opaca 1b.. Nachrichten der Akademie der Wissenschaften Güttingen 12:1–10
    [Google Scholar]
18. Reh M., Schlegel H.G. 1981; Hydrogen autotrophy as a transferable genetic character of Nocardia opaca lb.. Journal of General Microbiology 126:327–336
    [Google Scholar]
19. Rohe M., Schrage K., Meinhardt F. 1991; The linear plasmid pMC3-2 from Morchella conica is structurally related to adenovirus.. Current Genetics 20:527–533
    [Google Scholar]
20. Sakaguchi K. 1990; Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses.. Microbiological Reviews 54:66–74
    [Google Scholar]
21. Sambrook J., Fritsch E.F., Maniatis T. 1989 Molecular Cloning. A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.;
    [Google Scholar]
22. Sanger F., Nicklen S., Coulson A.R. 1977; DNA sequencing with chain-terminating inhibitors.. Proceedings of the National Academy of Sciences of the United States of America 74:5463–5467
    [Google Scholar]
23. Schneider K., Cammack R., Schlegel H.G. 1984; Content and localization of FMN, Fe-S clusters and nickel in the NAD-linked hydrogenase of Nocardia opaca 1 b.. European Journal of Biochemistry 142:75–84
    [Google Scholar]
24. Sensfuβ C., Reh M., Schlegel H.G. 1986; No correlation exists between the conjugative transfer of the autotrophic character and that of plasmids in Nocardia opaca strains.. Journal of General Microbiology 132:997–1007
    [Google Scholar]
25. Southern E.M. 1975; Detection of specific sequences among DNA fragments separated by gel electrophoresis.. Journal of Molecular Biology 98:503–517
    [Google Scholar]
26. Stillman B. 1989; Initiation of eukaryotic DNA replication in vitro. . Annual Review of Cell Biology 5:197–245
    [Google Scholar]
27. Vieira J., Messing J. 1987; Production of single-stranded DNA.. Methods in Enzymology 153:3–11
    [Google Scholar]
28. Wahl G.M., Stern M., Stark G.R. 1979; Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl- paper and rapid hybridization by using dextran sulfate.. Proceedings of the National Academy of Sciences of the United States of America 76:3683–3687
    [Google Scholar]
29. Waterbury P.G., Lane M.J. 1987; Generation of lambda phage concatemers for use as pulsed field electrophoresis size markers.. Nucleic Acids Research 15:3930.
    [Google Scholar]
30. Wu X., Roy K.L. 1993; Complete nucleotide sequence of a linear plasmid from Streptomyces clavuligerus and characterization of its RNA transcripts.. Journal of Bacteriology 175:37–52
    [Google Scholar]
31. Zaborosch C., Schneider K., Schlegel H.G., Kratzin H. 1989; Comparison of the NH₂-terminal amino acid sequences of the four non-identical subunits of the NAD-linked hydrogenases from Nocardia opaca lb and Alcaligenes eutrophus HI6.. European Journal of Biochemistry 181:175–180
    [Google Scholar]