1887

Abstract

Bf1 possesses two enzymes having glutamate dehydrogenase (GDH) activity. One is dual cofactor NAD(P)H-dependent, while the other has NADH-specific activity. The gene encoding the NADH-GDH () was cloned by complementation of the glutamate auxotrophic mutant MX3004 and the recombinant protein was characterized with respect to the GDH activities present in the parental organism grown under different nitrogen conditions. The NAD(P)H-dependent GDH of was confirmed to be most active under high ammonia conditions, but the NADH-specific GDH levels were increased by high peptide concentrations in the growth medium and not regulated by the levels of ammonia. Northern blotting analysis showed that regulation was at the transcription level, with a single transcript of ∼ 1.6 kb being produced. GDH activity was demonstrated by zymography of the parental and recombinant enzymes. The recombinant GDH was NADH-specific and co-migrated with the equivalent enzyme band from cell extracts. The structural gene comprises 1335 bp and encodes a protein of 445 aa (49 kDa). Comparisons of the derived protein sequence with that of GDH from other bacteria indicated that significant sequence homology and conservation of functional domains exists with enzymes of Family I-type hexameric GDH proteins.

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1998-06-01
2024-04-30
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References

  1. Abratt, V. R., Jones, D. T., Woods, D. R. (1985); Isolation and physiological characterisation of mitomycin C-sensitive/UV- sensitive mutants in Bacteroides fragilis.. J Gen Microbiol 131,:2479–2483
    [Google Scholar]
  2. Abratt, V. R., Zappe, H., Woods, D. R. (1993); A reporter gene vector to investigate the regulation of glutamine synthetase in Bacteroides fragilis Bfl.. J Gen Microbiol 139,:59–65
    [Google Scholar]
  3. Aiba, H., Adhya, S., de Crombrugghe, B. (1981); Evidence for two functional gal promoters in intact Escherichia coli cells.. J Biol Chem 256,:11905–11910
    [Google Scholar]
  4. Baggio, L., Morrison, M. (1996); The NAD(P)H-utilising glutamate dehydrogenase of Bacteroides thetaiotaomicron belongs to enzyme family I, and its activity is affected by transacting gene(s) positioned downstream of gdh A.. J Bacteriol 178,:7212–7220
    [Google Scholar]
  5. Benachenhou, N., Baldacci, G. (1991); The gene for a halophilic glutamate dehydrogenase: sequence, transcriptional analysis and phylogenetic implications.. Mol Gen Genet 230,:345–352
    [Google Scholar]
  6. Benachenhou-Lahfa, N., Forterre, P., Labedan, B. (1993); Evolution of glutamate dehydrogenase genes: evidence for two paralogous protein families and unusual branching patterns of the archaebacteria in the universal tree of life.. J Mol Evol 36,:335–346
    [Google Scholar]
  7. Castano, I., Flores, N., Valle, F., Covarrubias, A. A., Bolivar, F. (1992); g/tf, a member of the gltBDF operon of Escherichia coli, is involved in nitrogen-regulated gene expression.. Mol Microbiol 6,:2733–2741
    [Google Scholar]
  8. Kataoka, T. (1995); Purification and characterisation of a fibrinogen-degrading protease in Bacteroides fragilis strain YCH46.. Microb Immunol 39,:967–977
    [Google Scholar]
  9. Curtis, M. A., Slaney, J. M., Carman, R. J., Johnson, N. W. (1991); Identification of the major surface protein antigens of Porphy- romonas gingivalis using IgG antibody reactivity of periodontal case-control serum.. Oral Microbiol Immunol 6,321–326
    [Google Scholar]
  10. Devereux, J., Haeberli, P., Smithies, O. (1984); A comprehensive set of sequence analysis programs for the VAX.. Nucleic Acids Res 12,:387–395
    [Google Scholar]
  11. Duncan, P. A., White, B. A., Mackie, R. I. (1992); Purification and properties of NADP-dependent glutamate dehydrogenase from Ruminococcus flavefaciens FD-1.. Appl Environ Microbiol 58,:4032–1037
    [Google Scholar]
  12. Franco, A. A., Mundy, L. M., Trucksis, M., Wu, S., Kaper, J. B., Sears, C. L. (1997); Cloning and characterisation of the Bacteroides fragilis metalloprotease toxin gene.. Infect Immun 65,:1007–1013
    [Google Scholar]
  13. Gharbia, S. E., Shah H. N. (1995); Molecular analysis of surface-associated enzymes of Porphyromonas gingivalis.. Clin Infect Dis 20,:SI60–166
    [Google Scholar]
  14. Gibson, S. A., Macfarlane, G. T. (1988a); Studies on the proteolytic activity of Bacteroides fragilis.. J Gen Microbiol 134,:19–27
    [Google Scholar]
  15. Gibson, S. A., Macfarlane, G. T. (1988b); Characterization of proteases formed by Bacteroides fragilis.. J Gen Microbiol 134,:2231–2240
    [Google Scholar]
  16. Hammer, B. A., Johnson, E. A. (1988); Purification, properties, and metabolic roles of NAD+-glutamate dehydrogenase in Clostridium botulinum 113B.. Archi Microbiol 150,:460–164
    [Google Scholar]
  17. Henikoff, S. (1984); Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.. Gene 28,:351–359
    [Google Scholar]
  18. Holdeman, L. V., Moore, W. E. C. (1972) Anaerobe Laboratory Manual,, 4th edn.. Blacksburg, VA:: Virginia Polytechnic Institute and State University Anaerobe Laboratory.;
    [Google Scholar]
  19. Hill, R. T., Parker, J. R., Goodman, H. J., Jones, D. T., Woods, D. R. (1989); Molecular analysis of a novel glutamine synthetase of the anaerobe Bacteroides fragilis.. J Gen Microbiol 135,:3271–3279 (corrigendum 136, 787).
    [Google Scholar]
  20. Ish-Horowicz, D., Burke, J. F. (1981); Rapid and efficient cosmid cloning.. Nucleic Acids Res 9,:2989–2998
    [Google Scholar]
  21. Joe, A., Yamamoto, A., McBride, B. C. (1993); Characterisation of recombinant and native forms of a cell surface antigen of Porphyromonas (Bacteroides) gingivalis.. Infect Immun 61,:3294–3303
    [Google Scholar]
  22. Joe, A., Murray, C. S., McBride, B. C. (1994); Nucleotide sequence of a Porphyromonas gingivalis gene encoding a surface-associated glutamate dehydrogenase and construction of a glutamate dehydrogenase-deficient isogenic mutant.. Infect Immun 62,:1358–1368
    [Google Scholar]
  23. Kling, J. J., Wright, R. L., Moncrief, J. S., Wilkins, T. D. (1997); Cloning and characterisation of the gene for the metalloprotease enterotoxin of Bacteroides fragilis. FEMS Microbiol Lett 146,279–284
    [Google Scholar]
  24. Laemmli, U. K. (1970); Cleavage of structural proteins during the assembly of the head of bacteriophage T4.. Nature 227,:680–685
    [Google Scholar]
  25. Lyerly, D.„ Barroso, L., A., Wilkins, T. D. (1991); Identification of the latex-reactive protein of Clostridium difficile as glutamate dehydrogenase.. J Clin Microbiol 29,:2639–2642
    [Google Scholar]
  26. Macfarlane, G. T., Macfarlane, S., Gibson, S. A. W. (1993); Synthesis and release of proteases by Bacteroides fragilis.. Curr Microbiol 24,:55–59
    [Google Scholar]
  27. Moncrief, J. S., Obiso, R. Jr, Barroso, L. A., Kling, J. J., Wright, R. L., Van Tassell, R. L., Lyerly, D. M., Wilkins, T. D. (1995); The enterotoxin of Bacteroides fragilis is a metalloprotease.. Infect Immun 63,:175–181
    [Google Scholar]
  28. Mossie, K. G., Jones, D. T., Robb, F. T., Woods, D. R. (1979); Characterisation and mode of action of a bacteriocin produced by a Bacteroides fragilis strain.. Antimicrob Agents Chemother 16,:724–730
    [Google Scholar]
  29. Reitzer, L. J., Magasanik, B. (1987) Ammonia assimilation and the biosynthesis of glutamine, glutamate, aspartate, asparagine, L-alanine and D-alanine.. In Edited by Neidhardt, F. C., Ingraham, J. L., Ingraham, J. L., Brooks Low, K., Magasanik, B., Schaechter, M., Umbarger, H. E. Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Washington, DC:: American Society for Microbiology.;302–320
    [Google Scholar]
  30. Riepe, S. P., Goldstein, J., Alpens, D. H. (1980); Effects of secreted Bacteroides proteases on the human intestinal brush border enzymes.. J Clin Invest 66,:314–322
    [Google Scholar]
  31. Rosenberg, M., Court, D. (1979); Regulatory sequences involved in the promotion and termination of RNA transcription.. Annu Rev Genet 13,:319–353
    [Google Scholar]
  32. Saito, H., Yamamoto, I., Ishimoto, M. (1988); Reversible inactivation of glutamate dehydrogenase in Bacteroides fragilis: Purification and characterisation of high-activity and low-activity enzymes.. J Gen and Appl Microbiol 4,:377–385
    [Google Scholar]
  33. Sambrook, J., Fritsch, E. F., Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual., 2nd edn.. Cold Spring Harbor, NY:: Cold Spring Harbor Laboratory.;
    [Google Scholar]
  34. Sanger, F., Nicklen, S., Coulson, A. R. (1977); DNA sequencing with chain-terminating inhibitors.. Proc Natl Acad Sci USA 74,:5463–5467
    [Google Scholar]
  35. Shine, J., Dalgarno, L. (1974); The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome-binding sites.. Proc Natl Acad Sci USA 71,:1342–1346
    [Google Scholar]
  36. Smith, E. L., Austen, B. M., Blumenthal, K. M., Nyc, J. F. (1975) Glutamate dehydrogenases.. In Edited by Boyer, P. D. The Enzymes, vol. II. New York:: Academic Press.;293–367
    [Google Scholar]
  37. Southern, J. A., Parker, J. R., Woods, D. R. (1986); Expression and purification of glutamine synthetase cloned from Bacteroides fragilis.. J Gene Microbiol 132,:2827–2835
    [Google Scholar]
  38. Southern, J. A., Parker, J. R., Woods D. R. (1987); Novel structure, properties and inactivation of glutamine synthetase from cloned Bacteroides fragilis.. J Gen Microbiol 133,:2437–2446
    [Google Scholar]
  39. Teller, J. K., Smith, R. J., McPherson, M. J., Engel, P. C., Guest, J. R. (1992); The glutamate dehydrogenase gene of Clostridium symbiosum: cloning by polymerase chain reaction, sequence analysis and over-expression in Escherichia coli.. Eur J Biochem 206,:151–159
    [Google Scholar]
  40. Van Tassel, R. L., Lyerly, D. M., Wilkins, T. D. (1992); Purification and characterisation of an enterotoxin from Bacteroides fragilis.. Infect Immun 60,:1343–1350
    [Google Scholar]
  41. Varel, V. H., Bryant, M. P. (1974); Nutritional features of Bacteroides fragilis subsp. fragilis.. Appl Microbiol 28,:251–257
    [Google Scholar]
  42. Wehnert, G. U., Abratt, V. R., Goodman, H. J. K., Woods D. R. (1990); Cloning of Bacteroides fragilis plasmid genes affecting metronidazole resistance and ultraviolet survival in Escherichia coli.. Plasmid 23,:155–158
    [Google Scholar]
  43. Wen, Z. , Morrison, M. . (1996); The NAD(P)H-dependent glutamate dehydrogenase activities of Prevotella ruminicola B(l)4.can be attributed to one enzyme (GdhA), and gdhA expression is regulated in response to the nitrogen source available for growth. Appl Environ Microbiol 62,3826–3833
    [Google Scholar]
  44. Wen, Z., Morrison, M. (1997); Glutamate dehydrogenase activity profiles for type strains of ruminal Prevotella spp.. Appl Environ Microbiol 63,:3314–3317
    [Google Scholar]
  45. Yamamoto, I., Abe, A., Saito, H., Ishimoto, M. (1984); The pathway of ammonia assimilation in Bacteroides fragilis.. J Gen Appl Microbiol 30,499–508
    [Google Scholar]
  46. Yamamoto, I., Abe, A., Ishimoto, M. (1987a); Properties of glutamate dehydrogenase purified from Bacteroides fragilis.. J Biochem (Tokyo) 101,:1391–1397
    [Google Scholar]
  47. Yamamoto, I., Saito, H., Ishimoto, M. (1987b); Regulation of synthesis and reversible inactivation in vivo of dual coenzyme- specific glutamate dehydrogenase in Bacteroides fragilis.. J Gen Microbiol 133,:2773–2780
    [Google Scholar]
  48. Yanisch-Perron, C., Vieira, J., Messing, J. (1985); Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectors.. Gene 33,:103–119
    [Google Scholar]
  49. Zabeau, M., Stanley, K. K. (1982); Enhanced expression of cro-β-galactosidase fusion proteins under the control of the Pr promoter of bacteriophage lambda.. EMBO J 1,:1217–1224
    [Google Scholar]
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