1887

Abstract

In rhizobia, besides the constitutive acyl carrier protein (AcpP) involved in the biosynthesis and transfer of common fatty acids, there are at least three specialized acyl carrier proteins (ACPs): (1) the flavonoid-inducible nodulation protein NodF; (2) the RkpF protein, which is required for the biosynthesis of rhizobial capsular polysaccharides; and (3) AcpXL, which transfers 27-hydroxyoctacosanoic acid to a sugar backbone during lipid A biosynthesis. Whereas the nucleotide sequences encoding the three specialized ACPs are known, only the amino acid sequence of the AcpP of was available. In this study, using reverse genetics, the genes for the constitutive AcpPs of and of were cloned and sequenced. Previously, it had been shown that NodF and RkpF can be overproduced in using the T7 polymerase expression system. Using the same system, the constitutive AcpPs of and of , together with the specialized ACP AcpXL, were overproduced and purified. All the known ACPs of rhizobia can be labelled during expression in with radioactive β-alanine added to the growth medium due to their modification with a 4’-phosphopantetheine prosthetic group. The availability of all functionally different ACPs should help to unravel how different fatty acids are targeted towards different biosynthetic pathways in one organism.

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2000-04-01
2024-04-27
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References

  1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
    [Google Scholar]
  2. Atkinson E. M., Palcic M. M., Hindsgaul O., Long S. R. 1994; Biosynthesis of Rhizobium meliloti lipooligosaccharide Nod factors: NodA is required for an N-acyltransferase activity. Proc Natl Acad Sci USA 91:8418–8422 [CrossRef]
    [Google Scholar]
  3. Bibb M. J., Biro S., Motamedi H., Collins J. F., Hutchinson C. R. 1989; Analysis of the nucleotide sequence of the Streptomyces glaucescens tcmI genes provides key information about the enzymology of polyketide antibiotic biosynthesis. EMBO J 8:2727–2736
    [Google Scholar]
  4. Brozek K. A., Carlson R. W., Raetz C. H. R. 1996; A special acyl carrier protein for transferring long hydroxylated fatty acids to lipid A in Rhizobium. J Biol Chem 271:32126–32136 [CrossRef]
    [Google Scholar]
  5. Cronan J. E., Klages A. L. 1981; Chemical synthesis of acyl thioester of acyl carrier protein with native structure. Proc Natl Acad Sci USA 78:5440–5444 [CrossRef]
    [Google Scholar]
  6. Debellé F., Plazanet C., Roche P., Pujol C., Savagnac A., Rosenberg C., Promé J. C., Dénarie� J. 1996; The NodA proteins of Rhizobium meliloti and Rhizobium tropici specify the N-acylation of Nod factors by different fatty acids. Mol Microbiol 22:303–314 [CrossRef]
    [Google Scholar]
  7. Dénarie� J., Debellé F., Promé J. C. 1996; Rhizobium lipo-chitooligosaccharide nodulation factors: signaling molecules mediating recognition and morphogenesis. Annu Rev Biochem 65:503–535 [CrossRef]
    [Google Scholar]
  8. Epple G., van der Drift K. M. G. M., Thomas-Oates J. E., Geiger O. 1998; Characterization of a novel acyl carrier protein, RkpF, encoded by an operon involved in capsular polysaccharide biosynthesis in Sinorhizobium meliloti. J Bacteriol 180:4950–4954
    [Google Scholar]
  9. Fice D., Shen Z., Byers D. 1993; Purification and characterization of fatty acyl-acyl carrier protein synthetase from Vibrio harveyi. J Bacteriol 175:1865–1870
    [Google Scholar]
  10. Fuqua C., Winans S. C., Greenberg E. 1996; Census and consensus in bacterial ecosystems: the LuxR-LuxI family of quorum sensing transcriptional regulators. Annu Rev Microbiol 50:727–751 [CrossRef]
    [Google Scholar]
  11. Gehring A. M., Lambalot R. H., Vogel K. W., Drueckhammer D. G., Walsh C. T. 1997; Ability of Streptomyces spp. acyl carrier proteins and coenzyme A analogs to serve as substrates in vitro for E. coli holo-ACP synthase. Chem Biol 4:17–24 [CrossRef]
    [Google Scholar]
  12. Geiger O., Röhrs V., Weissenmayer B., Finan T. M., Thomas-Oates J. E. 1999; The regulator gene phoB mediates phosphate stress-controlled synthesis of the membrane lipid diacylglyceryl-N,N,N-trimethylhomoserine in Rhizobium (Sinorhizobium) meliloti. Mol Microbiol 32:63–73 [CrossRef]
    [Google Scholar]
  13. Ghose R., Geiger O., Prestegard J. H. 1996; NMR investigations of the structural properties of the nodulation protein, NodF, from Rhizobium leguminosarum and its homology with Escherichia coli acyl carrier protein. FEBS Lett 388:66–72 [CrossRef]
    [Google Scholar]
  14. Hill R. B., MacKenzie K. R., Flanagan J. M., Cronan J. E., Prestegard J. H. 1995; Overexpression, purification, and characterization of Escherichia coli acyl carrier protein and two mutant proteins. Protein Expr Purif 6:394–400 [CrossRef]
    [Google Scholar]
  15. Hooykaas P. J. J., van Brussel A. N. N., den Dulk-Raas H., van Slogteren G. M. S., Schilperoort R. A. 1981; Sym plasmid of Rhizobium trifolii expressed in different rhizobial species and Agrobacterium tumefaciens. Nature 291:351–353 [CrossRef]
    [Google Scholar]
  16. Issartel J.-P., Koronakis V., Hughes C. 1991; Activation of Escherichia coli prehaemolysin to the mature toxin by acyl carrier protein-dependent fatty acylation. Nature 351:759–761 [CrossRef]
    [Google Scholar]
  17. Jackowski S., Rock C. O. 1983; Ratio of active to inactive forms of acyl carrier protein in Escherichia coli. J Biol Chem 258:15186–15191
    [Google Scholar]
  18. Jackowski S., Cronan J. E. Jr, Rock C. O. 1991; Lipid metabolism in procaryotes. In Biochemistry of Lipids, Lipoproteins and Membranes pp. 43–85Edited by Vance D. E., Vance J. Amsterdam: Elsevier;
    [Google Scholar]
  19. Kim Y., Prestegard J. H. 1990; Refinement of the NMR structures for acyl carrier protein with scalar coupling data. Proteins 8:377–385 [CrossRef]
    [Google Scholar]
  20. Lambalot R. H., Walsh C. T. 1995; Cloning, overproduction, and characterization of the Escherichia coli holo-acyl carrier protein synthase. J Biol Chem 270:24658–24661 [CrossRef]
    [Google Scholar]
  21. Maiti M. K., Ghosh S. 1996; Acyl carrier protein of Azospirillum brasilense: properties of the purified protein and sequencing of the corresponding gene, acpP. Microbiology 142:2097–2103 [CrossRef]
    [Google Scholar]
  22. Meade H. M., Long S. R., Ruvkun G. B., Brown S. E., Ausubel F. M. 1982; Physical and genetic characterization of symbiotic and auxotrophic mutants of Rhizobium meliloti induced by transposon Tn5 mutagenesis. J Bacteriol 149:114–122
    [Google Scholar]
  23. Miller J. H. 1972 Experiments in Molecular Genetics Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  24. Østerås M., Stanley J., Finan T. M. 1995; Identification of Rhizobium-specific intergenic mosaic elements within an essential two-component regulatory system of Rhizobium species. J Bacteriol 177:5485–5494
    [Google Scholar]
  25. Petrovics G., Putnoky P., Reuhs B., Kim J., Thorp T. A., Noel K. D., Carlson R. W., Kondorosi A. 1993; The presence of a novel type of surface polysaccharide in Rhizobium meliloti requires a new fatty acid synthase-like gene cluster involved in symbiotic nodule development. Mol Microbiol 8:1083–1094 [CrossRef]
    [Google Scholar]
  26. Platt M. W., Miller K. J., Lane W. S., Kennedy E. P. 1990; Isolation and characterization of the constitutive acyl carrier protein from Rhizobium meliloti. J Bacteriol 172:5440–5444
    [Google Scholar]
  27. Rawlings M., Cronan J. E. 1992; The gene encoding Escherichia coli acyl carrier protein lies within a cluster of fatty acid biosynthetic genes. J Biol Chem 267:5751–5754
    [Google Scholar]
  28. Ray T. K., Cronan J. E. 1976; Activation of long chain fatty acyl carrier protein: demonstration of a new enzyme, acyl-acyl carrier protein synthetase, in Escherichia coli. Proc Natl Acad Sci USA 73:4374–4378 [CrossRef]
    [Google Scholar]
  29. Reuhs B. L. 1996; Acidic capsular polysaccharides (K antigens) of Rhizobium. In Biology of Plant–Microbe Interactions pp. 331–336Edited by Stacey G., Mullin B., Gresshoff P. M. St Paul, MN: International Society for Molecular Plant–Microbe Interactions;
    [Google Scholar]
  30. Ritsema T., Geiger O., van Dillewijn P., Lugtenberg B. J. J., Spaink H. P. 1994; Serine residue 45 of nodulation protein NodF from Rhizobium leguminosarum bv. viciae is essential for its biological function. J Bacteriol 176:7740–7743
    [Google Scholar]
  31. Ritsema T., Wijfjes A. H. M., Lugtenberg B. J. J., Spaink H. P. 1996; Rhizobium nodulation protein NodA is a host-specific determinant of the transfer of fatty acids in Nod factor biosynthesis. Mol Gen Genet 251:44–51
    [Google Scholar]
  32. Ritsema T., Lugtenberg B. J. J., Spaink H. P. 1997; Acyl-acyl carrier protein is a donor of fatty acids in the NodA-dependent step in biosynthesis of lipochitin oligosaccharides by rhizobia. J Bacteriol 179:4053–4055
    [Google Scholar]
  33. Ritsema T., Gehring A. M., Stuitje A. R.7 other authors 1998; Functional analysis of an interspecies chimera of acyl carrier proteins indicates a specialized domain for protein recognition. Mol Gen Genet 257:641–648 [CrossRef]
    [Google Scholar]
  34. Röhrig H., Schmidt J., Wieneke U., Kondorosi E., Barlier I., Schell J., John M. 1994; Biosynthesis of lipooligosaccharide nodulation factors: Rhizobium NodA protein is involved in N-acylation of the chitooligosaccharide backbone. Proc Natl Acad Sci USA 91:3122–3126 [CrossRef]
    [Google Scholar]
  35. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
  36. Sanger F., Nicklen S., Coulson A. R. 1977; DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467 [CrossRef]
    [Google Scholar]
  37. Shearman C. A., Rossen L., Johnston A. W. B., Downie J. A. 1986; The Rhizobium leguminosarum nodulation gene nodF encodes a polypeptide similar to acyl carrier protein and is regulated by nodD plus a factor in pea root exudate. EMBO J 5:647–652
    [Google Scholar]
  38. Shen Z., Fice D., Byers D. M. 1992; Preparation of fatty-acylated derivatives of acyl carrier protein using Vibrio harveyi acyl-ACP synthetase. Anal Biochem 204:34–39 [CrossRef]
    [Google Scholar]
  39. Sherman D. H., Malpartida F., Bibb M. J., Kieser H. M., Bibb M. J., Hopwood D. A. 1989; Structure and deduced function of the granaticin-producing polyketide synthase gene cluster of Streptomyces violaceoruber Tu22. EMBO J 8:2717–2725
    [Google Scholar]
  40. Studier F. W., Rosenberg A. H., Dunn J. J., Dubendorff J. W. 1990; Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol 185:60–89
    [Google Scholar]
  41. Triglia T., Peterson M. G., Kemp D. J. 1988; A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucleic Acids Res 16:8186 [CrossRef]
    [Google Scholar]
  42. Yang G.-P., Debell é F., Savagnac A.9 other authors 1999; Structure of the Mesorhizobium huakuii and Rhizobium galegae Nod factors: a cluster of phylogenetically related legumes are nodulated by rhizobia producing Nod factors with α,β-unsaturated N-acyl substitutions. Mol Microbiol 34:227–237 [CrossRef]
    [Google Scholar]
  43. Yanisch-Perron C., Vieira J., Messing J. 1985; Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103–119 [CrossRef]
    [Google Scholar]
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