Determination of a 15437 bp nucleotide sequence around the inhA gene of Mycobacterium avium and similarity analysis of the products of putative ORFs

References

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. 1990; Basic local alignment search tool.. Mol Biol 215:403–410
   [Google Scholar]
2. Altschul S.F., Boguski M.S., Gish W., Wooton J.C. 1994; Issues in searching molecular sequence databases.. Nat Genet 6:119–129
   [Google Scholar]
3. Bairoch A. 1992; PROSITE: a dictionary of sites and patterns in proteins.. Nucleic Acids Res 20:2013–2018
   [Google Scholar]
4. Banerjee A., Dubnau E., Quemard A., Balasubramanian V., Sun Um K., Wilson T., Collins D., de Lisle G., Jacobs W.R.Jr 1994; inhA, a gene encoding a target for isoniazid and ethionamide in Mycobacterium tuberculosis.. Science 263:227–230
   [Google Scholar]
5. Bhunia A.K. 1997; Antibodies to Listeria monocytogenes.. Crit Rev Microbiol 23:77–107
   [Google Scholar]
6. Bjellqvist B., Hughes G.J., Pasquali C., Paquet N., Ravier F., Sanchez J.-C., Frutiger S., Hochstrasser D.F. 1993; The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences.. Electrophoresis 14:1023–1031
   [Google Scholar]
7. Bjellqvist B., Basse B., Olsen E., Celis J.E. 1994; Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions.. Electrophoresis 15:529–539
   [Google Scholar]
8. Blanchard J.S. 1996; Molecular mechanisms of drug resistance in Mycobacterium tuberculosis.. Annu Rev Biochem 65:215–239
   [Google Scholar]
9. Bradbury A., Gruer M.J., Rudd K.E., Guest J.R. 1996; Thesecond aconitase (AcnB) of Escherichia coli.. Microbiology 142:389–400
   [Google Scholar]
10. Brennan P.J., Nikaido H. 1995; The envelope of mycobacteria.. Annu Rev Biochem 64:29–63
    [Google Scholar]
11. Bubert A., Kuhn M., Goebel W., Kohler S. 1992; Structural and functional properties of the p60 proteins from different Listeria species.. J Bacteriol 174:8166–8171
    [Google Scholar]
12. Crouse B.R., Sellers V.M., Finnegan M.G., Dailey H.A., Johnson M.K. 1996; Site-directed mutagenesis and spectro¬scopic characterization of human ferrochelatase: identification of residues coordinating the [2Fe-2S] cluster.. Biochemistry 35:16222–16229
    [Google Scholar]
13. Deretic V., Pagan-Ramos E., Zhang Y., Dhandayuthapani S., Via L.E. 1996; The extreme sensitivity of Mycobacterium tuberculosis to the front-line antituberculosis drug isoniazid.. Nat Biotechnol 14:1557–1561
    [Google Scholar]
14. Dessen A., Quemard A., Blanchard J.S., Jacobs W.R., Sacchettini J.C.Jr 1995; Crystal structure and function of the isoniazid target of Mycobacterium tuberculosis.. Science 227:1638–1641
    [Google Scholar]
15. Dingman D.W., Sonenshein A.L. 1987; Purification of aconitase from Bacillus subtilis and correlation of its N-terminal amino acid sequence with the sequence of the citB gene.. J Bacteriol 169:3068–3075
    [Google Scholar]
16. Everest P., Li J., Douce G., Charles I., De Azavedo J., Chatfield S., Dougan G., Roberts M. 1996; Role of the Bordetella pertussis P.69/pertactin protein and the P.69/pertactin RGD motif in the adherence to and invasion of mammalian cells.. Microbiology 142:3261–3268
    [Google Scholar]
17. Fenton M.J., Vermeulen M.W. 1996; Immunopathology of tuberculosis: roles of macrophages and monocytes.. Infect Immun 64:683–690
    [Google Scholar]
18. Frankel G., Hershkoviz R., Mould A.P., Kachalsky S.G., Candy D.C.A., Cahalon L., Humphries M.J., Dougan G. 1996; Thecell-binding domain of intimin from enteropathogenic Es-cherichia coli binds to β₁integrins.. J Biol Chetn 271:20359–20364
    [Google Scholar]
19. Gruer M.J., Artymiuk P.J., Guest J.R. 1997a; The aconitase family: three structural variations on a common theme.. Trends Biochem Sci 22:3–6
    [Google Scholar]
20. Gruer M.J., Bradbury A.J., Guest J.R. 1997b; Construction and properties of aconitase mutants of Escherichia coli.. Microbiology 143:1837–1846
    [Google Scholar]
21. Hayashi M., De Beilis L., Alpi A., Nishimura M. 1995; Cytosolic aconitase participates in the glyoxylate cycle in etiolated pumpkin cotyledons.. Plant Cell Physiol 36:669–680
    [Google Scholar]
22. Hayashi T., Rao P., Catanzaro A. 1997; Binding of the 68-kilodalton protein of Mycobacterium avium to α_vβ₃-on human monocyte-derived macrophages enhances complement receptor type 3 expression.. Infect Immun 65:1211–1216
    [Google Scholar]
23. Hentze M.W., Kuhn L.C. 1996; Molecular control of vertebrate iron metabolism: mRNA-based regulatory controls operated by iron, nitric oxide and oxidative stress.. Proc Natl Acad Sci USA 93:8175–8182
    [Google Scholar]
24. Hofmann K., Stoffel W. 1993; TMbase-a database of membrane spanning proteins segments.. Biol Chem Hoppe-Seyler 347:166
    [Google Scholar]
25. Inderlied C.B., Kemper C.A., Bermudez L.E.M. 1993; TheMycobacterium avium complex.. Clin Microbiol Rev 6:266–310
    [Google Scholar]
26. Kanazireva E., Biel A.J. 1995; Cloning and overexpression of the Rhodobacter capsulatus hemH gene.. J Bacteriol 177:6693–6694
    [Google Scholar]
27. Klausner R.D., Rouault T.A. 1993; A double life: cytosolic aconitase as a regulatory RNA binding protein.. Mol Biol Cell 4:1–5
    [Google Scholar]
28. Kohler S., Leimeister-Wachter M., Chakraborty T., Lottspeich F., Goebel W. 1990; The gene coding for protein p60 of Listeria monocytogenes and its use as a specific probe for Listeria monocytogenes.. Infect Immun 58:1943–1950
    [Google Scholar]
29. Lauble H., Kennedy M.C., Beinert H., Stout GD. 1992; Structure of activated aconitase: formation of the [4Fe-4S] cluster in the crystal.. Biochemistry 31:2735–2748
    [Google Scholar]
30. Leong J.M., Fournier R.S., Isberg R.R. 1990; Identification of the integrin binding domain of the Yersinia pseudotuberculosis invasin protein.. EMBO J 9:1979–1989
    [Google Scholar]
31. Liu J., Barry GE.III Besra G.S., Nikaido H. 1996; Mycolic acid structure determines the fluidity of the mycobacterial cell wall.. J Biol Chem 271:29545–29551
    [Google Scholar]
32. Ma D., Alberti M., Lynch C., Nikaido H., Hearst J.E. 1996; The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals.. Mol Microbiol 19:101–112
    [Google Scholar]
33. Mengaud J.M., Horwitz M.A. 1993; The major iron- containing protein of Legionella pneumophila is an aconitase homologous with the human iron-responsive element-binding protein.. J Bacteriol 175:5666–5676
    [Google Scholar]
34. Milano A., De Rossi E., Gusberti L., Heym B., Marone P., Riccardi G. 1996; The katE gene, which encodes the catalase HPII of Mycobacterium avium.. Mol Microbiol 19:113–123
    [Google Scholar]
35. Prodromou G, Haynes M.J., Guest J.R. 1991; The aconitase of Escherichia coli: purification of the enzyme and molecular cloning and map location of the gene (acn).. J Gen Microbiol 137:2505–2515
    [Google Scholar]
36. Rambukkana A., Salzer J.L., Yurchenco P.D., Tuomanen E.I. 1997; Neural targeting of Mycobacterium leprae mediated by the G domain of the laminin-α₂ chain.. Cell 88:811–821
    [Google Scholar]
37. Robbins A.H., Stout C.D. 1989; The structure of aconitase.. Proteins 5:289–312
    [Google Scholar]
38. Rouault T.A., Klausner R.D. 1996; Iron-sulfur clusters as biosensors of oxidants and iron.. Trends Biochem Sci 21:174–177
    [Google Scholar]
39. Rouslahti E., Pierschbacher M.D. 1986; Arg-Gly-Asp: a versatile cell recognition signal.. Cell 44:517–518
    [Google Scholar]
40. Rouslahti E., Pierschbacher M.D. 1987; New perspectives in cell adhesion: RGD and integrins.. Science 238:491–497
    [Google Scholar]
41. Sambrook J., Fritsch E.F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn.. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
42. Sanger F., Nicklen S., Coulson A.R. 1977; DNA sequencing with chain-terminating inhibitors.. Proc Natl Acad Sci USA 74:5463–5467
    [Google Scholar]
43. Sijts A.J.A.M., Pilip I., Pamer E.G. 1997; The Listeria monocytogenes-secreted p60 is an N-end rule substrate in the cytosol of infected cells.. J Biol Chem 272:19261–19268
    [Google Scholar]
44. van Spanning R.J., Wansell GW., De Boer T., Hazelaar M.J., Anazawa H., Harms N., Oltmann L.F., Stouthamer A.H. 1991; Isolation and characterization of the moxj, moxG, moxl, and moxR genes of Paracoccus denitrificans: inactivation of moxj, moxG, and moxR and the resultant effect on methylo- trophic growth.. J Bacteriol 173:6948–6961
    [Google Scholar]
45. Thompson J.D., Higgins D.G. 1994; CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice.. Nucleic Acids Res 22:4673–4680
    [Google Scholar]
46. Thony-Meyer L., Kunzler P. 1996; The Bradyrhizobium japonicum aconitase gene (acnA) is important for free-living growth but not for an effective root nodule symbiosis.. J Bacteriol 178:6166–6172
    [Google Scholar]
47. Wuenscher M.D., Kohler S., Bubert A., Gerike U., Goebel W. 1993; The iap gene of Listeria monocytogenes is essential for cell viability, and its gene product, p60, has bacteriolytic activity.. J Bacteriol 175:3491–3501
    [Google Scholar]
48. Zhang Y., Garbe T., Young D. 1993; Transformation with katG restores isoniazid-sensitivity in Mycobacterium tuberculosis isolates resistant to a range of drug concentrations.. Mol Microbiol 8:521–524
    [Google Scholar]
49. Zheng L., Andrews P.G, Hermodson M.A., Dixon J.E., Zalkin H. 1990; Cloning and structural characterization of porcine heart aconitase.. J Biol Chem 265:2814–2821
    [Google Scholar]
50. Zheng L., Kennedy M.G, Beinert H., Zalkin H. 1992; Mutational analysis of active site residues in pig heart aconitase.. J Biol Chem 267:7895–7903
    [Google Scholar]